Gene : evm_27.TU.AmTr_v1.0_scaffold00001.249 A. trichopoda v1.0
Defline:  (1 of 1) PTHR23076:SF33 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED Genomic Order:  246
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00001.249 Secondary Identifier:  ? PAC:31550994
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00001.249 0.5kb upstream 0.5kb upstream 7609 true AmTr_v1.0_scaffold00001: 5066927-5074535 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00001: 5074036-5074535 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 0.5kb downstream 0.5kb downstream 7609 true AmTr_v1.0_scaffold00001: 5066427-5074035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00001: 5066427-5066926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 1.0kb upstream 1.0kb upstream 8109 true AmTr_v1.0_scaffold00001: 5066927-5075035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00001: 5074036-5075035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 1.0kb downstream 1.0kb downstream 8109 true AmTr_v1.0_scaffold00001: 5065927-5074035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00001: 5065927-5066926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 2.0kb upstream 2.0kb upstream 9109 true AmTr_v1.0_scaffold00001: 5066927-5076035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00001: 5074036-5076035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 2.0kb downstream 2.0kb downstream 9109 true AmTr_v1.0_scaffold00001: 5064927-5074035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00001: 5064927-5066926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 5.0kb upstream 5.0kb upstream 12109 true AmTr_v1.0_scaffold00001: 5066927-5079035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00001: 5074036-5079035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 5.0kb downstream 5.0kb downstream 12109 true AmTr_v1.0_scaffold00001: 5061927-5074035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00001: 5061927-5066926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 10.0kb upstream 10.0kb upstream 17109 true AmTr_v1.0_scaffold00001: 5066927-5084035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00001: 5074036-5084035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 10.0kb downstream 10.0kb downstream 17109 true AmTr_v1.0_scaffold00001: 5056927-5074035 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.249 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00001: 5056927-5066926 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046642 5273 Angiosperm View MSA
121346512 5274 Embryophyte View MSA
123425128 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain