Gene : evm_27.TU.AmTr_v1.0_scaffold00001.57 A. trichopoda v1.0
Defline:  (1 of 1) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  57
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00001.57 Secondary Identifier:  ? PAC:31551130
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-7039 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00001.57 0.5kb upstream 0.5kb upstream 16186 true AmTr_v1.0_scaffold00001: 941801-957986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00001: 941801-942300 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 0.5kb downstream 0.5kb downstream 16186 true AmTr_v1.0_scaffold00001: 942301-958486 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00001: 957987-958486 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 1.0kb upstream 1.0kb upstream 16686 true AmTr_v1.0_scaffold00001: 941301-957986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00001: 941301-942300 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 1.0kb downstream 1.0kb downstream 16686 true AmTr_v1.0_scaffold00001: 942301-958986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00001: 957987-958986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 2.0kb upstream 2.0kb upstream 17686 true AmTr_v1.0_scaffold00001: 940301-957986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00001: 940301-942300 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 2.0kb downstream 2.0kb downstream 17686 true AmTr_v1.0_scaffold00001: 942301-959986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00001: 957987-959986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 5.0kb upstream 5.0kb upstream 20686 true AmTr_v1.0_scaffold00001: 937301-957986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00001: 937301-942300 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 5.0kb downstream 5.0kb downstream 20686 true AmTr_v1.0_scaffold00001: 942301-962986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00001: 957987-962986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 10.0kb upstream 10.0kb upstream 25686 true AmTr_v1.0_scaffold00001: 932301-957986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00001: 932301-942300 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 10.0kb downstream 10.0kb downstream 25686 true AmTr_v1.0_scaffold00001: 942301-967986 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.57 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00001: 957987-967986 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain