Gene : evm_27.TU.AmTr_v1.0_scaffold00003.43 A. trichopoda v1.0
Defline:  (1 of 41) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  42
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00003.43 Secondary Identifier:  ? PAC:31565472
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00003.43 0.5kb upstream 0.5kb upstream 9305 true AmTr_v1.0_scaffold00003: 821858-831162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00003: 821858-822357 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 0.5kb downstream 0.5kb downstream 9305 true AmTr_v1.0_scaffold00003: 822358-831662 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00003: 831163-831662 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 1.0kb upstream 1.0kb upstream 9805 true AmTr_v1.0_scaffold00003: 821358-831162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00003: 821358-822357 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 1.0kb downstream 1.0kb downstream 9805 true AmTr_v1.0_scaffold00003: 822358-832162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00003: 831163-832162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 2.0kb upstream 2.0kb upstream 10805 true AmTr_v1.0_scaffold00003: 820358-831162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00003: 820358-822357 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 2.0kb downstream 2.0kb downstream 10805 true AmTr_v1.0_scaffold00003: 822358-833162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00003: 831163-833162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 5.0kb upstream 5.0kb upstream 13805 true AmTr_v1.0_scaffold00003: 817358-831162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00003: 817358-822357 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 5.0kb downstream 5.0kb downstream 13805 true AmTr_v1.0_scaffold00003: 822358-836162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00003: 831163-836162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 10.0kb upstream 10.0kb upstream 18805 true AmTr_v1.0_scaffold00003: 812358-831162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00003: 812358-822357 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 10.0kb downstream 10.0kb downstream 18805 true AmTr_v1.0_scaffold00003: 822358-841162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.43 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00003: 831163-841162 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042693 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346514 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain