Gene : evm_27.TU.AmTr_v1.0_scaffold00010.329 A. trichopoda v1.0
Defline:  (1 of 1) PTHR21087:SF8 - SHIKIMATE KINASE 1, CHLOROPLASTIC-RELATED Genomic Order:  326
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00010.329 Secondary Identifier:  ? PAC:31572741
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda ARO-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-6163 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00010.329 0.5kb upstream 0.5kb upstream 7595 true AmTr_v1.0_scaffold00010: 5972721-5980315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00010: 5972721-5973220 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 0.5kb downstream 0.5kb downstream 7595 true AmTr_v1.0_scaffold00010: 5973221-5980815 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00010: 5980316-5980815 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 1.0kb upstream 1.0kb upstream 8095 true AmTr_v1.0_scaffold00010: 5972221-5980315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00010: 5972221-5973220 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 1.0kb downstream 1.0kb downstream 8095 true AmTr_v1.0_scaffold00010: 5973221-5981315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00010: 5980316-5981315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 2.0kb upstream 2.0kb upstream 9095 true AmTr_v1.0_scaffold00010: 5971221-5980315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00010: 5971221-5973220 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 2.0kb downstream 2.0kb downstream 9095 true AmTr_v1.0_scaffold00010: 5973221-5982315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00010: 5980316-5982315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 5.0kb upstream 5.0kb upstream 12095 true AmTr_v1.0_scaffold00010: 5968221-5980315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00010: 5968221-5973220 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 5.0kb downstream 5.0kb downstream 12095 true AmTr_v1.0_scaffold00010: 5973221-5985315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00010: 5980316-5985315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 10.0kb upstream 10.0kb upstream 17095 true AmTr_v1.0_scaffold00010: 5963221-5980315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00010: 5963221-5973220 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 10.0kb downstream 10.0kb downstream 17095 true AmTr_v1.0_scaffold00010: 5973221-5990315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.329 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00010: 5980316-5990315 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046124 5273 Angiosperm View MSA
121349272 5274 Embryophyte View MSA
123425467 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain