Gene : evm_27.TU.AmTr_v1.0_scaffold00012.54 A. trichopoda v1.0
Defline:  (1 of 17) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  54
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00012.54 Secondary Identifier:  ? PAC:31553140
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00012.54 0.5kb upstream 0.5kb upstream 2526 true AmTr_v1.0_scaffold00012: 1222654-1225179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00012: 1222654-1223153 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 0.5kb downstream 0.5kb downstream 2526 true AmTr_v1.0_scaffold00012: 1223154-1225679 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00012: 1225180-1225679 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 1.0kb upstream 1.0kb upstream 3026 true AmTr_v1.0_scaffold00012: 1222154-1225179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00012: 1222154-1223153 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 1.0kb downstream 1.0kb downstream 3026 true AmTr_v1.0_scaffold00012: 1223154-1226179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00012: 1225180-1226179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 2.0kb upstream 2.0kb upstream 4026 true AmTr_v1.0_scaffold00012: 1221154-1225179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00012: 1221154-1223153 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 2.0kb downstream 2.0kb downstream 4026 true AmTr_v1.0_scaffold00012: 1223154-1227179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00012: 1225180-1227179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 5.0kb upstream 5.0kb upstream 7026 true AmTr_v1.0_scaffold00012: 1218154-1225179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00012: 1218154-1223153 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 5.0kb downstream 5.0kb downstream 7026 true AmTr_v1.0_scaffold00012: 1223154-1230179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00012: 1225180-1230179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 10.0kb upstream 10.0kb upstream 12026 true AmTr_v1.0_scaffold00012: 1213154-1225179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00012: 1213154-1223153 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 10.0kb downstream 10.0kb downstream 12026 true AmTr_v1.0_scaffold00012: 1223154-1235179 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.54 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00012: 1225180-1235179 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain