Gene : evm_27.TU.AmTr_v1.0_scaffold00016.160 A. trichopoda v1.0
Defline:  (1 of 1) PTHR19384:SF54 - FERREDOXIN--NADP REDUCTASE, ROOT ISOZYME 1, CHLOROPLASTIC-RELATED Genomic Order:  157
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00016.160 Secondary Identifier:  ? PAC:31569826
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-101 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00016.160 0.5kb upstream 0.5kb upstream 3691 true AmTr_v1.0_scaffold00016: 3526017-3529707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00016: 3526017-3526516 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 0.5kb downstream 0.5kb downstream 3691 true AmTr_v1.0_scaffold00016: 3526517-3530207 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00016: 3529708-3530207 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 1.0kb upstream 1.0kb upstream 4191 true AmTr_v1.0_scaffold00016: 3525517-3529707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00016: 3525517-3526516 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 1.0kb downstream 1.0kb downstream 4191 true AmTr_v1.0_scaffold00016: 3526517-3530707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00016: 3529708-3530707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 2.0kb upstream 2.0kb upstream 5191 true AmTr_v1.0_scaffold00016: 3524517-3529707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00016: 3524517-3526516 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 2.0kb downstream 2.0kb downstream 5191 true AmTr_v1.0_scaffold00016: 3526517-3531707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00016: 3529708-3531707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 5.0kb upstream 5.0kb upstream 8191 true AmTr_v1.0_scaffold00016: 3521517-3529707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00016: 3521517-3526516 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 5.0kb downstream 5.0kb downstream 8191 true AmTr_v1.0_scaffold00016: 3526517-3534707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00016: 3529708-3534707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 10.0kb upstream 10.0kb upstream 13191 true AmTr_v1.0_scaffold00016: 3516517-3529707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00016: 3516517-3526516 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 10.0kb downstream 10.0kb downstream 13191 true AmTr_v1.0_scaffold00016: 3526517-3539707 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.160 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00016: 3529708-3539707 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045006 5273 Angiosperm View MSA
121347443 5274 Embryophyte View MSA
123424825 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain