Gene : evm_27.TU.AmTr_v1.0_scaffold00032.92 A. trichopoda v1.0
Defline:  (1 of 6) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  92
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00032.92 Secondary Identifier:  ? PAC:31559976
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CAROTENOID-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-6475 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00032.92 0.5kb upstream 0.5kb upstream 9401 true AmTr_v1.0_scaffold00032: 1823840-1833240 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00032: 1832741-1833240 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 0.5kb downstream 0.5kb downstream 9401 true AmTr_v1.0_scaffold00032: 1823340-1832740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00032: 1823340-1823839 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 1.0kb upstream 1.0kb upstream 9901 true AmTr_v1.0_scaffold00032: 1823840-1833740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00032: 1832741-1833740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 1.0kb downstream 1.0kb downstream 9901 true AmTr_v1.0_scaffold00032: 1822840-1832740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00032: 1822840-1823839 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 2.0kb upstream 2.0kb upstream 10901 true AmTr_v1.0_scaffold00032: 1823840-1834740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00032: 1832741-1834740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 2.0kb downstream 2.0kb downstream 10901 true AmTr_v1.0_scaffold00032: 1821840-1832740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00032: 1821840-1823839 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 5.0kb upstream 5.0kb upstream 13901 true AmTr_v1.0_scaffold00032: 1823840-1837740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00032: 1832741-1837740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 5.0kb downstream 5.0kb downstream 13901 true AmTr_v1.0_scaffold00032: 1818840-1832740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00032: 1818840-1823839 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 10.0kb upstream 10.0kb upstream 18901 true AmTr_v1.0_scaffold00032: 1823840-1842740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00032: 1832741-1842740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 10.0kb downstream 10.0kb downstream 18901 true AmTr_v1.0_scaffold00032: 1813840-1832740 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.92 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00032: 1813840-1823839 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain