Gene : evm_27.TU.AmTr_v1.0_scaffold00036.76 A. trichopoda v1.0
Defline:  (1 of 1) KOG4411 - Phytoene/squalene synthetase Genomic Order:  74
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00036.76 Secondary Identifier:  ? PAC:31554295
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CAROTENOID-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-6475 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00036.76 0.5kb upstream 0.5kb upstream 1391 true AmTr_v1.0_scaffold00036: 2409098-2410488 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00036: 2409989-2410488 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 0.5kb downstream 0.5kb downstream 1391 true AmTr_v1.0_scaffold00036: 2408598-2409988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00036: 2408598-2409097 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 1.0kb upstream 1.0kb upstream 1891 true AmTr_v1.0_scaffold00036: 2409098-2410988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00036: 2409989-2410988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 1.0kb downstream 1.0kb downstream 1891 true AmTr_v1.0_scaffold00036: 2408098-2409988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00036: 2408098-2409097 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 2.0kb upstream 2.0kb upstream 2891 true AmTr_v1.0_scaffold00036: 2409098-2411988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00036: 2409989-2411988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 2.0kb downstream 2.0kb downstream 2891 true AmTr_v1.0_scaffold00036: 2407098-2409988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00036: 2407098-2409097 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 5.0kb upstream 5.0kb upstream 5891 true AmTr_v1.0_scaffold00036: 2409098-2414988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00036: 2409989-2414988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 5.0kb downstream 5.0kb downstream 5891 true AmTr_v1.0_scaffold00036: 2404098-2409988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00036: 2404098-2409097 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 10.0kb upstream 10.0kb upstream 10891 true AmTr_v1.0_scaffold00036: 2409098-2419988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00036: 2409989-2419988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 10.0kb downstream 10.0kb downstream 10891 true AmTr_v1.0_scaffold00036: 2399098-2409988 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.76 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00036: 2399098-2409097 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043915 5273 Angiosperm View MSA
121344708 5274 Embryophyte View MSA
123424120 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain