Gene : evm_27.TU.AmTr_v1.0_scaffold00040.102 A. trichopoda v1.0
Defline:  (1 of 2) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  102
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00040.102 Secondary Identifier:  ? PAC:31567869
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6809 Amborella trichopoda pathologic  
Atrichopoda PWY-695 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00040.102 0.5kb upstream 0.5kb upstream 2126 true AmTr_v1.0_scaffold00040: 1872558-1874683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00040: 1872558-1873057 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 0.5kb downstream 0.5kb downstream 2126 true AmTr_v1.0_scaffold00040: 1873058-1875183 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00040: 1874684-1875183 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 1.0kb upstream 1.0kb upstream 2626 true AmTr_v1.0_scaffold00040: 1872058-1874683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00040: 1872058-1873057 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 1.0kb downstream 1.0kb downstream 2626 true AmTr_v1.0_scaffold00040: 1873058-1875683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00040: 1874684-1875683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 2.0kb upstream 2.0kb upstream 3626 true AmTr_v1.0_scaffold00040: 1871058-1874683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00040: 1871058-1873057 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 2.0kb downstream 2.0kb downstream 3626 true AmTr_v1.0_scaffold00040: 1873058-1876683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00040: 1874684-1876683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 5.0kb upstream 5.0kb upstream 6626 true AmTr_v1.0_scaffold00040: 1868058-1874683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00040: 1868058-1873057 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 5.0kb downstream 5.0kb downstream 6626 true AmTr_v1.0_scaffold00040: 1873058-1879683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00040: 1874684-1879683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 10.0kb upstream 10.0kb upstream 11626 true AmTr_v1.0_scaffold00040: 1863058-1874683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00040: 1863058-1873057 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 10.0kb downstream 10.0kb downstream 11626 true AmTr_v1.0_scaffold00040: 1873058-1884683 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00040.102 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00040: 1874684-1884683 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048987 5273 Angiosperm View MSA
121311196 5274 Embryophyte View MSA
123348524 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain