Gene : evm_27.TU.AmTr_v1.0_scaffold00066.265 A. trichopoda v1.0
Defline:  (1 of 2) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  265
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00066.265 Secondary Identifier:  ? PAC:31563942
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-5173 Amborella trichopoda pathologic  
Atrichopoda PWY-5464 Amborella trichopoda pathologic  
Atrichopoda PYRUVDEHYD-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00066.265 0.5kb upstream 0.5kb upstream 5109 true AmTr_v1.0_scaffold00066: 3660091-3665199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00066: 3664700-3665199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 0.5kb downstream 0.5kb downstream 5109 true AmTr_v1.0_scaffold00066: 3659591-3664699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00066: 3659591-3660090 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 1.0kb upstream 1.0kb upstream 5609 true AmTr_v1.0_scaffold00066: 3660091-3665699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00066: 3664700-3665699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 1.0kb downstream 1.0kb downstream 5609 true AmTr_v1.0_scaffold00066: 3659091-3664699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00066: 3659091-3660090 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 2.0kb upstream 2.0kb upstream 6609 true AmTr_v1.0_scaffold00066: 3660091-3666699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00066: 3664700-3666699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 2.0kb downstream 2.0kb downstream 6609 true AmTr_v1.0_scaffold00066: 3658091-3664699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00066: 3658091-3660090 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 5.0kb upstream 5.0kb upstream 9609 true AmTr_v1.0_scaffold00066: 3660091-3669699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00066: 3664700-3669699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 5.0kb downstream 5.0kb downstream 9609 true AmTr_v1.0_scaffold00066: 3655091-3664699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00066: 3655091-3660090 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 10.0kb upstream 10.0kb upstream 14609 true AmTr_v1.0_scaffold00066: 3660091-3674699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00066: 3664700-3674699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 10.0kb downstream 10.0kb downstream 14609 true AmTr_v1.0_scaffold00066: 3650091-3664699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00066.265 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00066: 3650091-3660090 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain