Gene : evm_27.TU.AmTr_v1.0_scaffold00106.23 A. trichopoda v1.0
Defline:  (1 of 4) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  23
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00106.23 Secondary Identifier:  ? PAC:31550255
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00106.23 0.5kb upstream 0.5kb upstream 1143 true AmTr_v1.0_scaffold00106: 384914-386056 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00106: 385557-386056 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 0.5kb downstream 0.5kb downstream 1143 true AmTr_v1.0_scaffold00106: 384414-385556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00106: 384414-384913 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 1.0kb upstream 1.0kb upstream 1643 true AmTr_v1.0_scaffold00106: 384914-386556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00106: 385557-386556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 1.0kb downstream 1.0kb downstream 1643 true AmTr_v1.0_scaffold00106: 383914-385556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00106: 383914-384913 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 2.0kb upstream 2.0kb upstream 2643 true AmTr_v1.0_scaffold00106: 384914-387556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00106: 385557-387556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 2.0kb downstream 2.0kb downstream 2643 true AmTr_v1.0_scaffold00106: 382914-385556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00106: 382914-384913 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 5.0kb upstream 5.0kb upstream 5643 true AmTr_v1.0_scaffold00106: 384914-390556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00106: 385557-390556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 5.0kb downstream 5.0kb downstream 5643 true AmTr_v1.0_scaffold00106: 379914-385556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00106: 379914-384913 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 10.0kb upstream 10.0kb upstream 10643 true AmTr_v1.0_scaffold00106: 384914-395556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00106: 385557-395556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 10.0kb downstream 10.0kb downstream 10643 true AmTr_v1.0_scaffold00106: 374914-385556 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00106.23 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00106: 374914-384913 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040037 5273 Angiosperm Singleton cluster - no MSA
121308931 5274 Embryophyte Singleton cluster - no MSA
123346597 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain