Gene : evm_27.TU.AmTr_v1.0_scaffold00107.39 A. trichopoda v1.0
Defline:  (1 of 1) PTHR31339:SF3 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  38
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00107.39 Secondary Identifier:  ? PAC:31572438
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00107.39 0.5kb upstream 0.5kb upstream 34226 true AmTr_v1.0_scaffold00107: 1638133-1672358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00107: 1638133-1638632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 0.5kb downstream 0.5kb downstream 34226 true AmTr_v1.0_scaffold00107: 1638633-1672858 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00107: 1672359-1672858 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 1.0kb upstream 1.0kb upstream 34726 true AmTr_v1.0_scaffold00107: 1637633-1672358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00107: 1637633-1638632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 1.0kb downstream 1.0kb downstream 34726 true AmTr_v1.0_scaffold00107: 1638633-1673358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00107: 1672359-1673358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 2.0kb upstream 2.0kb upstream 35726 true AmTr_v1.0_scaffold00107: 1636633-1672358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00107: 1636633-1638632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 2.0kb downstream 2.0kb downstream 35726 true AmTr_v1.0_scaffold00107: 1638633-1674358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00107: 1672359-1674358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 5.0kb upstream 5.0kb upstream 38726 true AmTr_v1.0_scaffold00107: 1633633-1672358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00107: 1633633-1638632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 5.0kb downstream 5.0kb downstream 38726 true AmTr_v1.0_scaffold00107: 1638633-1677358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00107: 1672359-1677358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 10.0kb upstream 10.0kb upstream 43726 true AmTr_v1.0_scaffold00107: 1628633-1672358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00107: 1628633-1638632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 10.0kb downstream 10.0kb downstream 43726 true AmTr_v1.0_scaffold00107: 1638633-1682358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00107.39 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00107: 1672359-1682358 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043550 5273 Angiosperm View MSA
121310146 5274 Embryophyte View MSA
123347715 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain