Gene : evm_27.TU.AmTr_v1.0_scaffold00209.4 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11946:SF86 - METHIONINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  4
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00209.4 Secondary Identifier:  ? PAC:31568189
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00209.4 0.5kb upstream 0.5kb upstream 19506 true AmTr_v1.0_scaffold00209: 121564-141069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00209: 121564-122063 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 0.5kb downstream 0.5kb downstream 19506 true AmTr_v1.0_scaffold00209: 122064-141569 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00209: 141070-141569 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 1.0kb upstream 1.0kb upstream 20006 true AmTr_v1.0_scaffold00209: 121064-141069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00209: 121064-122063 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 1.0kb downstream 1.0kb downstream 20006 true AmTr_v1.0_scaffold00209: 122064-142069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00209: 141070-142069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 2.0kb upstream 2.0kb upstream 21006 true AmTr_v1.0_scaffold00209: 120064-141069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00209: 120064-122063 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 2.0kb downstream 2.0kb downstream 21006 true AmTr_v1.0_scaffold00209: 122064-143069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00209: 141070-143069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 5.0kb upstream 5.0kb upstream 24006 true AmTr_v1.0_scaffold00209: 117064-141069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00209: 117064-122063 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 5.0kb downstream 5.0kb downstream 24006 true AmTr_v1.0_scaffold00209: 122064-146069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00209: 141070-146069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 10.0kb upstream 10.0kb upstream 29006 true AmTr_v1.0_scaffold00209: 112064-141069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00209: 112064-122063 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 10.0kb downstream 10.0kb downstream 29006 true AmTr_v1.0_scaffold00209: 122064-151069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00209.4 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00209: 141070-151069 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain