Gene : Brast03G039900 B. stacei v1.1
Defline:  (1 of 1) PTHR10314:SF98 - TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED Genomic Order:  399
Name:  ? Brast03G039900 Secondary Identifier:  ? PAC:32859037
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstacei PWY-4161 Brachypodium stacei pathologic  
Bstacei PWY-6949 Brachypodium stacei pathologic  
Bstacei TRPSYN-PWY Brachypodium stacei pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brast03G039900 0.5kb upstream 0.5kb upstream 3784 true Chr03: 2392807-2396590 Brachypodium stacei
Brast03G039900 0.5kb upstream 0.5kb upstream 500 false Chr03: 2396091-2396590 Brachypodium stacei
Brast03G039900 0.5kb downstream 0.5kb downstream 3784 true Chr03: 2392307-2396090 Brachypodium stacei
Brast03G039900 0.5kb downstream 0.5kb downstream 500 false Chr03: 2392307-2392806 Brachypodium stacei
Brast03G039900 1.0kb upstream 1.0kb upstream 4284 true Chr03: 2392807-2397090 Brachypodium stacei
Brast03G039900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 2396091-2397090 Brachypodium stacei
Brast03G039900 1.0kb downstream 1.0kb downstream 4284 true Chr03: 2391807-2396090 Brachypodium stacei
Brast03G039900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 2391807-2392806 Brachypodium stacei
Brast03G039900 2.0kb upstream 2.0kb upstream 5284 true Chr03: 2392807-2398090 Brachypodium stacei
Brast03G039900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 2396091-2398090 Brachypodium stacei
Brast03G039900 2.0kb downstream 2.0kb downstream 5284 true Chr03: 2390807-2396090 Brachypodium stacei
Brast03G039900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 2390807-2392806 Brachypodium stacei
Brast03G039900 5.0kb upstream 5.0kb upstream 8284 true Chr03: 2392807-2401090 Brachypodium stacei
Brast03G039900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 2396091-2401090 Brachypodium stacei
Brast03G039900 5.0kb downstream 5.0kb downstream 8284 true Chr03: 2387807-2396090 Brachypodium stacei
Brast03G039900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 2387807-2392806 Brachypodium stacei
Brast03G039900 10.0kb upstream 10.0kb upstream 13284 true Chr03: 2392807-2406090 Brachypodium stacei
Brast03G039900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 2396091-2406090 Brachypodium stacei
Brast03G039900 10.0kb downstream 10.0kb downstream 13284 true Chr03: 2382807-2396090 Brachypodium stacei
Brast03G039900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 2382807-2392806 Brachypodium stacei

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577172 5269 Grass View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain