Gene : Vocar.0048s0010 V. carteri v2.1
Defline:  (1 of 96) PF12499 - Pherophorin (DUF3707) Description:  pherophorin-V29; extracellular matrix protein (ECM protein, cell wall protein); belongs to the large pherophorin-family, a family of glycoproteins with a central hydroxyproline-rich (HR) domain; reference: Hallmann, A. (2006) Plant J. 45: 292-307 [PMID: 1
Genomic Order:  10 Name:  ? Vocar.0048s0010
Secondary Identifier:  ? PAC:32893664
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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Vocar.0048s0010 0.5kb upstream 0.5kb upstream 4646 true scaffold_48: 396369-401014 Volvox carteri
Vocar.0048s0010 0.5kb upstream 0.5kb upstream 500 false scaffold_48: 396369-396868 Volvox carteri
Vocar.0048s0010 0.5kb downstream 0.5kb downstream 4646 true scaffold_48: 396869-401514 Volvox carteri
Vocar.0048s0010 0.5kb downstream 0.5kb downstream 500 false scaffold_48: 401015-401514 Volvox carteri
Vocar.0048s0010 1.0kb upstream 1.0kb upstream 5146 true scaffold_48: 395869-401014 Volvox carteri
Vocar.0048s0010 1.0kb upstream 1.0kb upstream 1000 false scaffold_48: 395869-396868 Volvox carteri
Vocar.0048s0010 1.0kb downstream 1.0kb downstream 5146 true scaffold_48: 396869-402014 Volvox carteri
Vocar.0048s0010 1.0kb downstream 1.0kb downstream 1000 false scaffold_48: 401015-402014 Volvox carteri
Vocar.0048s0010 2.0kb upstream 2.0kb upstream 6146 true scaffold_48: 394869-401014 Volvox carteri
Vocar.0048s0010 2.0kb upstream 2.0kb upstream 2000 false scaffold_48: 394869-396868 Volvox carteri
Vocar.0048s0010 2.0kb downstream 2.0kb downstream 6146 true scaffold_48: 396869-403014 Volvox carteri
Vocar.0048s0010 2.0kb downstream 2.0kb downstream 2000 false scaffold_48: 401015-403014 Volvox carteri
Vocar.0048s0010 5.0kb upstream 5.0kb upstream 9146 true scaffold_48: 391869-401014 Volvox carteri
Vocar.0048s0010 5.0kb upstream 5.0kb upstream 5000 false scaffold_48: 391869-396868 Volvox carteri
Vocar.0048s0010 5.0kb downstream 5.0kb downstream 9146 true scaffold_48: 396869-406014 Volvox carteri
Vocar.0048s0010 5.0kb downstream 5.0kb downstream 5000 false scaffold_48: 401015-406014 Volvox carteri
Vocar.0048s0010 10.0kb upstream 10.0kb upstream 14146 true scaffold_48: 386869-401014 Volvox carteri
Vocar.0048s0010 10.0kb upstream 10.0kb upstream 10000 false scaffold_48: 386869-396868 Volvox carteri
Vocar.0048s0010 10.0kb downstream 10.0kb downstream 14146 true scaffold_48: 396869-411014 Volvox carteri
Vocar.0048s0010 10.0kb downstream 10.0kb downstream 10000 false scaffold_48: 401015-411014 Volvox carteri

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124086543 5260 Chlorophyte View MSA
123403877 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain