21 Parents
Identifier | Name | Description |
---|---|---|
GO:0043234 | protein complex | A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical. |
GO:0016592 | mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
GO:0000123 | histone acetyltransferase complex | A protein complex that possesses histone acetyltransferase activity. |
GO:0005667 | transcription factor complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. |
GO:1902494 | catalytic complex | A protein complex which is capable of catalytic activity. |
GO:0044464 | cell part | Any constituent part of a cell, the basic structural and functional unit of all organisms. |
GO:0044424 | intracellular part | Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. |
GO:0032991 | macromolecular complex | A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which the constituent parts function together. |
GO:0005575 | cellular_component | The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together. |
GO:0044428 | nuclear part | Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. |
GO:0044422 | organelle part | Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane. |
GO:0044446 | intracellular organelle part | A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane. |
GO:0044451 | nucleoplasm part | Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus. |
GO:0044798 | nuclear transcription factor complex | A protein complex, located in the nucleus, that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. |
GO:0031248 | protein acetyltransferase complex | A complex that catalyzes the transfer of an acetyl group to a protein acceptor molecule. |
GO:1990234 | transferase complex | A protein complex capable of catalyzing the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). |
GO:1902493 | acetyltransferase complex | A protein complex which is capable of acetyltransferase activity. |
GO:0090575 | RNA polymerase II transcription factor complex | A transcription factor complex that acts at promoters of genes transcribed by RNA polymerase II. |
GO:0002929 | MECO complex | A highly stable complex composed of the ATAC complex and the mediator complex (also called TRAP or MED). MECO binds and regulates the transcription of a subset of non-coding RNAs transcribed by RNA polymerase II. |
GO:0005671 | Ada2/Gcn5/Ada3 transcription activator complex | A multiprotein complex that possesses histone acetyltransferase and is involved in regulation of transcription. Contains either GCN5 or PCAF in a mutually exclusive manner. The budding yeast complex includes Gcn5p, two proteins of the Ada family, and two TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. Both ATAC- or SAGA (see GO:0000124, SAGA complex) are involved in the acetylation of histone H3K9 and K14 residues. |
GO:0070847 | core mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The core mediator complex has a stimulatory effect on basal transcription, and contains most of the same subdomains as the larger form of mediator complex -- a head domain comprising proteins known in Saccharomyces as Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; and a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p -- but lacks the regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan core mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
23 Relations
Relationship |
Parent Term . Identifier |
Child Term . Identifier |
---|---|---|
is_a | GO:0043234 | GO:0002929 |
has_part | GO:0005671 | GO:0002929 |
has_part | GO:0016592 | GO:0002929 |
has_part | GO:0005667 | GO:0002929 |
is_a | GO:0005575 | GO:0002929 |
has_part | GO:0005575 | GO:0002929 |
has_part | GO:1990234 | GO:0002929 |
has_part | GO:0000123 | GO:0002929 |
has_part | GO:0031248 | GO:0002929 |
has_part | GO:0032991 | GO:0002929 |
has_part | GO:0090575 | GO:0002929 |
has_part | GO:0070847 | GO:0002929 |
has_part | GO:0044428 | GO:0002929 |
has_part | GO:1902494 | GO:0002929 |
has_part | GO:1902493 | GO:0002929 |
has_part | GO:0044424 | GO:0002929 |
has_part | GO:0044798 | GO:0002929 |
has_part | GO:0044446 | GO:0002929 |
has_part | GO:0044464 | GO:0002929 |
has_part | GO:0043234 | GO:0002929 |
has_part | GO:0044422 | GO:0002929 |
is_a | GO:0032991 | GO:0002929 |
has_part | GO:0044451 | GO:0002929 |