Gene : orange1.1g007291m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  262
Name:  ? orange1.1g007291m.g Secondary Identifier:  ? PAC:18113032
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis PWY-695 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g007291m.g 0.5kb upstream 0.5kb upstream 2434 true scaffold00007: 1680643-1683076 Citrus sinensis
orange1.1g007291m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00007: 1680643-1681142 Citrus sinensis
orange1.1g007291m.g 0.5kb downstream 0.5kb downstream 2434 true scaffold00007: 1681143-1683576 Citrus sinensis
orange1.1g007291m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00007: 1683077-1683576 Citrus sinensis
orange1.1g007291m.g 1.0kb upstream 1.0kb upstream 2934 true scaffold00007: 1680143-1683076 Citrus sinensis
orange1.1g007291m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00007: 1680143-1681142 Citrus sinensis
orange1.1g007291m.g 1.0kb downstream 1.0kb downstream 2934 true scaffold00007: 1681143-1684076 Citrus sinensis
orange1.1g007291m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00007: 1683077-1684076 Citrus sinensis
orange1.1g007291m.g 2.0kb upstream 2.0kb upstream 3934 true scaffold00007: 1679143-1683076 Citrus sinensis
orange1.1g007291m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00007: 1679143-1681142 Citrus sinensis
orange1.1g007291m.g 2.0kb downstream 2.0kb downstream 3934 true scaffold00007: 1681143-1685076 Citrus sinensis
orange1.1g007291m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00007: 1683077-1685076 Citrus sinensis
orange1.1g007291m.g 5.0kb upstream 5.0kb upstream 6934 true scaffold00007: 1676143-1683076 Citrus sinensis
orange1.1g007291m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00007: 1676143-1681142 Citrus sinensis
orange1.1g007291m.g 5.0kb downstream 5.0kb downstream 6934 true scaffold00007: 1681143-1688076 Citrus sinensis
orange1.1g007291m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00007: 1683077-1688076 Citrus sinensis
orange1.1g007291m.g 10.0kb upstream 10.0kb upstream 11934 true scaffold00007: 1671143-1683076 Citrus sinensis
orange1.1g007291m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00007: 1671143-1681142 Citrus sinensis
orange1.1g007291m.g 10.0kb downstream 10.0kb downstream 11934 true scaffold00007: 1681143-1693076 Citrus sinensis
orange1.1g007291m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00007: 1683077-1693076 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124346886 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain