Gene : orange1.1g040748m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  608
Name:  ? orange1.1g040748m.g Secondary Identifier:  ? PAC:18137247
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis PWY-1081 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g040748m.g 0.5kb upstream 0.5kb upstream 2715 true scaffold00001: 4064543-4067257 Citrus sinensis
orange1.1g040748m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00001: 4064543-4065042 Citrus sinensis
orange1.1g040748m.g 0.5kb downstream 0.5kb downstream 2715 true scaffold00001: 4065043-4067757 Citrus sinensis
orange1.1g040748m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00001: 4067258-4067757 Citrus sinensis
orange1.1g040748m.g 1.0kb upstream 1.0kb upstream 3215 true scaffold00001: 4064043-4067257 Citrus sinensis
orange1.1g040748m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00001: 4064043-4065042 Citrus sinensis
orange1.1g040748m.g 1.0kb downstream 1.0kb downstream 3215 true scaffold00001: 4065043-4068257 Citrus sinensis
orange1.1g040748m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00001: 4067258-4068257 Citrus sinensis
orange1.1g040748m.g 2.0kb upstream 2.0kb upstream 4215 true scaffold00001: 4063043-4067257 Citrus sinensis
orange1.1g040748m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00001: 4063043-4065042 Citrus sinensis
orange1.1g040748m.g 2.0kb downstream 2.0kb downstream 4215 true scaffold00001: 4065043-4069257 Citrus sinensis
orange1.1g040748m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00001: 4067258-4069257 Citrus sinensis
orange1.1g040748m.g 5.0kb upstream 5.0kb upstream 7215 true scaffold00001: 4060043-4067257 Citrus sinensis
orange1.1g040748m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00001: 4060043-4065042 Citrus sinensis
orange1.1g040748m.g 5.0kb downstream 5.0kb downstream 7215 true scaffold00001: 4065043-4072257 Citrus sinensis
orange1.1g040748m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00001: 4067258-4072257 Citrus sinensis
orange1.1g040748m.g 10.0kb upstream 10.0kb upstream 12215 true scaffold00001: 4055043-4067257 Citrus sinensis
orange1.1g040748m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00001: 4055043-4065042 Citrus sinensis
orange1.1g040748m.g 10.0kb downstream 10.0kb downstream 12215 true scaffold00001: 4065043-4077257 Citrus sinensis
orange1.1g040748m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00001: 4067258-4077257 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain