Gene : orange1.1g006680m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR11451:SF5 - THREONINE--TRNA LIGASE 1, CYTOPLASMIC-RELATED Genomic Order:  287
Name:  ? orange1.1g006680m.g Secondary Identifier:  ? PAC:18101473
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis TRNA-CHARGING-PWY Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g006680m.g 0.5kb upstream 0.5kb upstream 11044 true scaffold00003: 2046119-2057162 Citrus sinensis
orange1.1g006680m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00003: 2046119-2046618 Citrus sinensis
orange1.1g006680m.g 0.5kb downstream 0.5kb downstream 11044 true scaffold00003: 2046619-2057662 Citrus sinensis
orange1.1g006680m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00003: 2057163-2057662 Citrus sinensis
orange1.1g006680m.g 1.0kb upstream 1.0kb upstream 11544 true scaffold00003: 2045619-2057162 Citrus sinensis
orange1.1g006680m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00003: 2045619-2046618 Citrus sinensis
orange1.1g006680m.g 1.0kb downstream 1.0kb downstream 11544 true scaffold00003: 2046619-2058162 Citrus sinensis
orange1.1g006680m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00003: 2057163-2058162 Citrus sinensis
orange1.1g006680m.g 2.0kb upstream 2.0kb upstream 12544 true scaffold00003: 2044619-2057162 Citrus sinensis
orange1.1g006680m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00003: 2044619-2046618 Citrus sinensis
orange1.1g006680m.g 2.0kb downstream 2.0kb downstream 12544 true scaffold00003: 2046619-2059162 Citrus sinensis
orange1.1g006680m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00003: 2057163-2059162 Citrus sinensis
orange1.1g006680m.g 5.0kb upstream 5.0kb upstream 15544 true scaffold00003: 2041619-2057162 Citrus sinensis
orange1.1g006680m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00003: 2041619-2046618 Citrus sinensis
orange1.1g006680m.g 5.0kb downstream 5.0kb downstream 15544 true scaffold00003: 2046619-2062162 Citrus sinensis
orange1.1g006680m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00003: 2057163-2062162 Citrus sinensis
orange1.1g006680m.g 10.0kb upstream 10.0kb upstream 20544 true scaffold00003: 2036619-2057162 Citrus sinensis
orange1.1g006680m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00003: 2036619-2046618 Citrus sinensis
orange1.1g006680m.g 10.0kb downstream 10.0kb downstream 20544 true scaffold00003: 2046619-2067162 Citrus sinensis
orange1.1g006680m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00003: 2057163-2067162 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124337472 5266 SBM View MSA
124249574 5268 Malvidae View MSA
124061778 5270 Rosid View MSA
123740183 5271 Pentapetalae View MSA
122787371 5272 Eudicot View MSA
122045647 5273 Angiosperm View MSA
123429084 5275 Viridiplantae View MSA
121345438 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain