Gene : Eucgr.A00197 E. grandis v2.0
Defline:  (1 of 2) 2.1.1.257 - tRNA (pseudouridine(54)-N(1))-methyltransferase / M(1)-Psi methyltransferase Genomic Order:  387
Name:  ? Eucgr.A00197 Secondary Identifier:  ? PAC:32046994
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00197 0.5kb upstream 0.5kb upstream 3081 true Chr01: 7848977-7852057 Eucalyptus grandis
Eucgr.A00197 0.5kb upstream 0.5kb upstream 500 false Chr01: 7851558-7852057 Eucalyptus grandis
Eucgr.A00197 0.5kb downstream 0.5kb downstream 3081 true Chr01: 7848477-7851557 Eucalyptus grandis
Eucgr.A00197 0.5kb downstream 0.5kb downstream 500 false Chr01: 7848477-7848976 Eucalyptus grandis
Eucgr.A00197 1.0kb upstream 1.0kb upstream 3581 true Chr01: 7848977-7852557 Eucalyptus grandis
Eucgr.A00197 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7851558-7852557 Eucalyptus grandis
Eucgr.A00197 1.0kb downstream 1.0kb downstream 3581 true Chr01: 7847977-7851557 Eucalyptus grandis
Eucgr.A00197 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7847977-7848976 Eucalyptus grandis
Eucgr.A00197 2.0kb upstream 2.0kb upstream 4581 true Chr01: 7848977-7853557 Eucalyptus grandis
Eucgr.A00197 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7851558-7853557 Eucalyptus grandis
Eucgr.A00197 2.0kb downstream 2.0kb downstream 4581 true Chr01: 7846977-7851557 Eucalyptus grandis
Eucgr.A00197 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7846977-7848976 Eucalyptus grandis
Eucgr.A00197 5.0kb upstream 5.0kb upstream 7581 true Chr01: 7848977-7856557 Eucalyptus grandis
Eucgr.A00197 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7851558-7856557 Eucalyptus grandis
Eucgr.A00197 5.0kb downstream 5.0kb downstream 7581 true Chr01: 7843977-7851557 Eucalyptus grandis
Eucgr.A00197 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7843977-7848976 Eucalyptus grandis
Eucgr.A00197 10.0kb upstream 10.0kb upstream 12581 true Chr01: 7848977-7861557 Eucalyptus grandis
Eucgr.A00197 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7851558-7861557 Eucalyptus grandis
Eucgr.A00197 10.0kb downstream 10.0kb downstream 12581 true Chr01: 7838977-7851557 Eucalyptus grandis
Eucgr.A00197 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7838977-7848976 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066897 5270 Rosid View MSA
123749345 5271 Pentapetalae View MSA
122789424 5272 Eudicot View MSA
122046063 5273 Angiosperm View MSA
121345370 5274 Embryophyte View MSA
123425050 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.7367 0.0 58.1777   High
cufflinks 8.01616 0.0 19.9363    
cufflinks 23.2293 0.0 52.7912    
cufflinks 11.3483 0.0 27.2524    
cufflinks 6.08589 0.0 15.5546   Low
cufflinks 16.7462 0.0 39.1244    

0 Strain