Gene : Eucgr.A00052 E. grandis v2.0
Defline:  (1 of 6) 2.3.3.13 - 2-isopropylmalate synthase / Isopropylmalate synthetase Genomic Order:  62
Name:  ? Eucgr.A00052 Secondary Identifier:  ? PAC:32049124
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis BRANCHED-CHAIN-AA-SYN-PWY Eucalyptus grandis pathologic  
Egrandis LEUSYN-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00052 0.5kb upstream 0.5kb upstream 8821 true Chr01: 1197578-1206398 Eucalyptus grandis
Eucgr.A00052 0.5kb upstream 0.5kb upstream 500 false Chr01: 1197578-1198077 Eucalyptus grandis
Eucgr.A00052 0.5kb downstream 0.5kb downstream 8821 true Chr01: 1198078-1206898 Eucalyptus grandis
Eucgr.A00052 0.5kb downstream 0.5kb downstream 500 false Chr01: 1206399-1206898 Eucalyptus grandis
Eucgr.A00052 1.0kb upstream 1.0kb upstream 9321 true Chr01: 1197078-1206398 Eucalyptus grandis
Eucgr.A00052 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1197078-1198077 Eucalyptus grandis
Eucgr.A00052 1.0kb downstream 1.0kb downstream 9321 true Chr01: 1198078-1207398 Eucalyptus grandis
Eucgr.A00052 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1206399-1207398 Eucalyptus grandis
Eucgr.A00052 2.0kb upstream 2.0kb upstream 10321 true Chr01: 1196078-1206398 Eucalyptus grandis
Eucgr.A00052 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1196078-1198077 Eucalyptus grandis
Eucgr.A00052 2.0kb downstream 2.0kb downstream 10321 true Chr01: 1198078-1208398 Eucalyptus grandis
Eucgr.A00052 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1206399-1208398 Eucalyptus grandis
Eucgr.A00052 5.0kb upstream 5.0kb upstream 13321 true Chr01: 1193078-1206398 Eucalyptus grandis
Eucgr.A00052 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1193078-1198077 Eucalyptus grandis
Eucgr.A00052 5.0kb downstream 5.0kb downstream 13321 true Chr01: 1198078-1211398 Eucalyptus grandis
Eucgr.A00052 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1206399-1211398 Eucalyptus grandis
Eucgr.A00052 10.0kb upstream 10.0kb upstream 18321 true Chr01: 1188078-1206398 Eucalyptus grandis
Eucgr.A00052 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1188078-1198077 Eucalyptus grandis
Eucgr.A00052 10.0kb downstream 10.0kb downstream 18321 true Chr01: 1198078-1216398 Eucalyptus grandis
Eucgr.A00052 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1206399-1216398 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.4229 0.0 29.928   High
cufflinks 2.82046 0.0 7.05647    
cufflinks 11.8879 0.0 26.5816   High
cufflinks 1.93025 0.0 5.00709    
cufflinks 1.21075 0.0 3.30148   Low
cufflinks 5.93232 0.0 13.9456    

0 Strain