Gene : Eucgr.A00018 E. grandis v2.0
Defline:  (1 of 3) PTHR31088:SF6 - MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC Genomic Order:  149
Name:  ? Eucgr.A00018 Secondary Identifier:  ? PAC:32048357
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00018 0.5kb upstream 0.5kb upstream 8485 true Chr01: 2638632-2647116 Eucalyptus grandis
Eucgr.A00018 0.5kb upstream 0.5kb upstream 500 false Chr01: 2638632-2639131 Eucalyptus grandis
Eucgr.A00018 0.5kb downstream 0.5kb downstream 8485 true Chr01: 2639132-2647616 Eucalyptus grandis
Eucgr.A00018 0.5kb downstream 0.5kb downstream 500 false Chr01: 2647117-2647616 Eucalyptus grandis
Eucgr.A00018 1.0kb upstream 1.0kb upstream 8985 true Chr01: 2638132-2647116 Eucalyptus grandis
Eucgr.A00018 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2638132-2639131 Eucalyptus grandis
Eucgr.A00018 1.0kb downstream 1.0kb downstream 8985 true Chr01: 2639132-2648116 Eucalyptus grandis
Eucgr.A00018 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2647117-2648116 Eucalyptus grandis
Eucgr.A00018 2.0kb upstream 2.0kb upstream 9985 true Chr01: 2637132-2647116 Eucalyptus grandis
Eucgr.A00018 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2637132-2639131 Eucalyptus grandis
Eucgr.A00018 2.0kb downstream 2.0kb downstream 9985 true Chr01: 2639132-2649116 Eucalyptus grandis
Eucgr.A00018 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2647117-2649116 Eucalyptus grandis
Eucgr.A00018 5.0kb upstream 5.0kb upstream 12985 true Chr01: 2634132-2647116 Eucalyptus grandis
Eucgr.A00018 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2634132-2639131 Eucalyptus grandis
Eucgr.A00018 5.0kb downstream 5.0kb downstream 12985 true Chr01: 2639132-2652116 Eucalyptus grandis
Eucgr.A00018 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2647117-2652116 Eucalyptus grandis
Eucgr.A00018 10.0kb upstream 10.0kb upstream 17985 true Chr01: 2629132-2647116 Eucalyptus grandis
Eucgr.A00018 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2629132-2639131 Eucalyptus grandis
Eucgr.A00018 10.0kb downstream 10.0kb downstream 17985 true Chr01: 2639132-2657116 Eucalyptus grandis
Eucgr.A00018 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2647117-2657116 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067961 5270 Rosid View MSA
123738548 5271 Pentapetalae View MSA
122792154 5272 Eudicot View MSA
122046010 5273 Angiosperm View MSA
121345792 5274 Embryophyte View MSA
123427031 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.29476 0.0 15.8065    
cufflinks 1.04902 0.0 3.60649   Low
cufflinks 4.93187 0.0 12.7907    
cufflinks 2.70726 0.0 7.6059    
cufflinks 2.17394 0.0 6.343    
cufflinks 26.7768 0.0 68.4357   High

0 Strain