Gene : Eucgr.A00794 E. grandis v2.0
Defline:  (1 of 1) PF00562//PF04561//PF04563//PF04565//PF04566//PF04567 - RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6) // RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2) // RNA polymerase beta subunit (RNA_pol_Rpb2_1) // RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3) // RNA polymerase Rpb2, domain 4 (RNA_pol_Rpb2_4) // RNA polymerase Rpb2, domain 5 (RNA_pol_Rpb2_5) Genomic Order:  626
Name:  ? Eucgr.A00794 Secondary Identifier:  ? PAC:32046222
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00794 0.5kb upstream 0.5kb upstream 18247 true Chr01: 12487006-12505252 Eucalyptus grandis
Eucgr.A00794 0.5kb upstream 0.5kb upstream 500 false Chr01: 12504753-12505252 Eucalyptus grandis
Eucgr.A00794 0.5kb downstream 0.5kb downstream 18247 true Chr01: 12486506-12504752 Eucalyptus grandis
Eucgr.A00794 0.5kb downstream 0.5kb downstream 500 false Chr01: 12486506-12487005 Eucalyptus grandis
Eucgr.A00794 1.0kb upstream 1.0kb upstream 18747 true Chr01: 12487006-12505752 Eucalyptus grandis
Eucgr.A00794 1.0kb upstream 1.0kb upstream 1000 false Chr01: 12504753-12505752 Eucalyptus grandis
Eucgr.A00794 1.0kb downstream 1.0kb downstream 18747 true Chr01: 12486006-12504752 Eucalyptus grandis
Eucgr.A00794 1.0kb downstream 1.0kb downstream 1000 false Chr01: 12486006-12487005 Eucalyptus grandis
Eucgr.A00794 2.0kb upstream 2.0kb upstream 19747 true Chr01: 12487006-12506752 Eucalyptus grandis
Eucgr.A00794 2.0kb upstream 2.0kb upstream 2000 false Chr01: 12504753-12506752 Eucalyptus grandis
Eucgr.A00794 2.0kb downstream 2.0kb downstream 19747 true Chr01: 12485006-12504752 Eucalyptus grandis
Eucgr.A00794 2.0kb downstream 2.0kb downstream 2000 false Chr01: 12485006-12487005 Eucalyptus grandis
Eucgr.A00794 5.0kb upstream 5.0kb upstream 22747 true Chr01: 12487006-12509752 Eucalyptus grandis
Eucgr.A00794 5.0kb upstream 5.0kb upstream 5000 false Chr01: 12504753-12509752 Eucalyptus grandis
Eucgr.A00794 5.0kb downstream 5.0kb downstream 22747 true Chr01: 12482006-12504752 Eucalyptus grandis
Eucgr.A00794 5.0kb downstream 5.0kb downstream 5000 false Chr01: 12482006-12487005 Eucalyptus grandis
Eucgr.A00794 10.0kb upstream 10.0kb upstream 27747 true Chr01: 12487006-12514752 Eucalyptus grandis
Eucgr.A00794 10.0kb upstream 10.0kb upstream 10000 false Chr01: 12504753-12514752 Eucalyptus grandis
Eucgr.A00794 10.0kb downstream 10.0kb downstream 27747 true Chr01: 12477006-12504752 Eucalyptus grandis
Eucgr.A00794 10.0kb downstream 10.0kb downstream 10000 false Chr01: 12477006-12487005 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050748 5270 Rosid View MSA
123752243 5271 Pentapetalae View MSA
122792415 5272 Eudicot View MSA
122051648 5273 Angiosperm View MSA
121349897 5274 Embryophyte View MSA
123426325 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.11705 0.0 5.27648   Low
cufflinks 3.27258 0.0 7.75669    
cufflinks 2.80793 0.0 6.7605    
cufflinks 2.2993 0.0 5.61951    
cufflinks 2.9498 0.0 7.07889    
cufflinks 4.38508 0.0 10.2464   High

0 Strain