Gene : Eucgr.A00800 E. grandis v2.0
Defline:  (1 of 16) PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  620
Name:  ? Eucgr.A00800 Secondary Identifier:  ? PAC:32048562
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00800 0.5kb upstream 0.5kb upstream 3057 true Chr01: 12430414-12433470 Eucalyptus grandis
Eucgr.A00800 0.5kb upstream 0.5kb upstream 500 false Chr01: 12430414-12430913 Eucalyptus grandis
Eucgr.A00800 0.5kb downstream 0.5kb downstream 3057 true Chr01: 12430914-12433970 Eucalyptus grandis
Eucgr.A00800 0.5kb downstream 0.5kb downstream 500 false Chr01: 12433471-12433970 Eucalyptus grandis
Eucgr.A00800 1.0kb upstream 1.0kb upstream 3557 true Chr01: 12429914-12433470 Eucalyptus grandis
Eucgr.A00800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 12429914-12430913 Eucalyptus grandis
Eucgr.A00800 1.0kb downstream 1.0kb downstream 3557 true Chr01: 12430914-12434470 Eucalyptus grandis
Eucgr.A00800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 12433471-12434470 Eucalyptus grandis
Eucgr.A00800 2.0kb upstream 2.0kb upstream 4557 true Chr01: 12428914-12433470 Eucalyptus grandis
Eucgr.A00800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 12428914-12430913 Eucalyptus grandis
Eucgr.A00800 2.0kb downstream 2.0kb downstream 4557 true Chr01: 12430914-12435470 Eucalyptus grandis
Eucgr.A00800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 12433471-12435470 Eucalyptus grandis
Eucgr.A00800 5.0kb upstream 5.0kb upstream 7557 true Chr01: 12425914-12433470 Eucalyptus grandis
Eucgr.A00800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 12425914-12430913 Eucalyptus grandis
Eucgr.A00800 5.0kb downstream 5.0kb downstream 7557 true Chr01: 12430914-12438470 Eucalyptus grandis
Eucgr.A00800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 12433471-12438470 Eucalyptus grandis
Eucgr.A00800 10.0kb upstream 10.0kb upstream 12557 true Chr01: 12420914-12433470 Eucalyptus grandis
Eucgr.A00800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 12420914-12430913 Eucalyptus grandis
Eucgr.A00800 10.0kb downstream 10.0kb downstream 12557 true Chr01: 12430914-12443470 Eucalyptus grandis
Eucgr.A00800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 12433471-12443470 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068525 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.26161 0.0 10.1467   High
cufflinks 0.61775 0.0 1.78323 Low Low
cufflinks 2.66177 0.0 6.62714    
cufflinks 0.808839 0.0 2.26122    
cufflinks 0.934224 0.0 2.58086    
cufflinks 2.95721 0.0 7.29862    

0 Strain