Gene : Eucgr.A00716 E. grandis v2.0
Defline:  (1 of 9) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  687
Name:  ? Eucgr.A00716 Secondary Identifier:  ? PAC:32046176
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00716 0.5kb upstream 0.5kb upstream 3232 true Chr01: 13925138-13928369 Eucalyptus grandis
Eucgr.A00716 0.5kb upstream 0.5kb upstream 500 false Chr01: 13925138-13925637 Eucalyptus grandis
Eucgr.A00716 0.5kb downstream 0.5kb downstream 3232 true Chr01: 13925638-13928869 Eucalyptus grandis
Eucgr.A00716 0.5kb downstream 0.5kb downstream 500 false Chr01: 13928370-13928869 Eucalyptus grandis
Eucgr.A00716 1.0kb upstream 1.0kb upstream 3732 true Chr01: 13924638-13928369 Eucalyptus grandis
Eucgr.A00716 1.0kb upstream 1.0kb upstream 1000 false Chr01: 13924638-13925637 Eucalyptus grandis
Eucgr.A00716 1.0kb downstream 1.0kb downstream 3732 true Chr01: 13925638-13929369 Eucalyptus grandis
Eucgr.A00716 1.0kb downstream 1.0kb downstream 1000 false Chr01: 13928370-13929369 Eucalyptus grandis
Eucgr.A00716 2.0kb upstream 2.0kb upstream 4732 true Chr01: 13923638-13928369 Eucalyptus grandis
Eucgr.A00716 2.0kb upstream 2.0kb upstream 2000 false Chr01: 13923638-13925637 Eucalyptus grandis
Eucgr.A00716 2.0kb downstream 2.0kb downstream 4732 true Chr01: 13925638-13930369 Eucalyptus grandis
Eucgr.A00716 2.0kb downstream 2.0kb downstream 2000 false Chr01: 13928370-13930369 Eucalyptus grandis
Eucgr.A00716 5.0kb upstream 5.0kb upstream 7732 true Chr01: 13920638-13928369 Eucalyptus grandis
Eucgr.A00716 5.0kb upstream 5.0kb upstream 5000 false Chr01: 13920638-13925637 Eucalyptus grandis
Eucgr.A00716 5.0kb downstream 5.0kb downstream 7732 true Chr01: 13925638-13933369 Eucalyptus grandis
Eucgr.A00716 5.0kb downstream 5.0kb downstream 5000 false Chr01: 13928370-13933369 Eucalyptus grandis
Eucgr.A00716 10.0kb upstream 10.0kb upstream 12732 true Chr01: 13915638-13928369 Eucalyptus grandis
Eucgr.A00716 10.0kb upstream 10.0kb upstream 10000 false Chr01: 13915638-13925637 Eucalyptus grandis
Eucgr.A00716 10.0kb downstream 10.0kb downstream 12732 true Chr01: 13925638-13938369 Eucalyptus grandis
Eucgr.A00716 10.0kb downstream 10.0kb downstream 10000 false Chr01: 13928370-13938369 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068933 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.4251 0.0 4.01053    
cufflinks 0.248927 0.0 0.923864 Low Low
cufflinks 1.48438 0.0 4.12936    
cufflinks 0.224882 0.0 0.836417 Low Low
cufflinks 0.895025 0.0 2.72066    
cufflinks 1.78205 0.0 5.01235    

0 Strain