Gene : Eucgr.A01225 E. grandis v2.0
Defline:  (1 of 1) PTHR26312:SF76 - TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN Genomic Order:  1034
Name:  ? Eucgr.A01225 Secondary Identifier:  ? PAC:32046305
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01225 0.5kb upstream 0.5kb upstream 2108 true Chr01: 23458155-23460262 Eucalyptus grandis
Eucgr.A01225 0.5kb upstream 0.5kb upstream 500 false Chr01: 23458155-23458654 Eucalyptus grandis
Eucgr.A01225 0.5kb downstream 0.5kb downstream 2108 true Chr01: 23458655-23460762 Eucalyptus grandis
Eucgr.A01225 0.5kb downstream 0.5kb downstream 500 false Chr01: 23460263-23460762 Eucalyptus grandis
Eucgr.A01225 1.0kb upstream 1.0kb upstream 2608 true Chr01: 23457655-23460262 Eucalyptus grandis
Eucgr.A01225 1.0kb upstream 1.0kb upstream 1000 false Chr01: 23457655-23458654 Eucalyptus grandis
Eucgr.A01225 1.0kb downstream 1.0kb downstream 2608 true Chr01: 23458655-23461262 Eucalyptus grandis
Eucgr.A01225 1.0kb downstream 1.0kb downstream 1000 false Chr01: 23460263-23461262 Eucalyptus grandis
Eucgr.A01225 2.0kb upstream 2.0kb upstream 3608 true Chr01: 23456655-23460262 Eucalyptus grandis
Eucgr.A01225 2.0kb upstream 2.0kb upstream 2000 false Chr01: 23456655-23458654 Eucalyptus grandis
Eucgr.A01225 2.0kb downstream 2.0kb downstream 3608 true Chr01: 23458655-23462262 Eucalyptus grandis
Eucgr.A01225 2.0kb downstream 2.0kb downstream 2000 false Chr01: 23460263-23462262 Eucalyptus grandis
Eucgr.A01225 5.0kb upstream 5.0kb upstream 6608 true Chr01: 23453655-23460262 Eucalyptus grandis
Eucgr.A01225 5.0kb upstream 5.0kb upstream 5000 false Chr01: 23453655-23458654 Eucalyptus grandis
Eucgr.A01225 5.0kb downstream 5.0kb downstream 6608 true Chr01: 23458655-23465262 Eucalyptus grandis
Eucgr.A01225 5.0kb downstream 5.0kb downstream 5000 false Chr01: 23460263-23465262 Eucalyptus grandis
Eucgr.A01225 10.0kb upstream 10.0kb upstream 11608 true Chr01: 23448655-23460262 Eucalyptus grandis
Eucgr.A01225 10.0kb upstream 10.0kb upstream 10000 false Chr01: 23448655-23458654 Eucalyptus grandis
Eucgr.A01225 10.0kb downstream 10.0kb downstream 11608 true Chr01: 23458655-23470262 Eucalyptus grandis
Eucgr.A01225 10.0kb downstream 10.0kb downstream 10000 false Chr01: 23460263-23470262 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062008 5270 Rosid View MSA
123737830 5271 Pentapetalae View MSA
122791127 5272 Eudicot View MSA
122050724 5273 Angiosperm View MSA
121348352 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.5482 0.0 41.4189    
cufflinks 5.65968 0.0 13.8418   Low
cufflinks 12.6268 0.0 28.7749    
cufflinks 7.30619 0.0 17.3542    
cufflinks 6.26551 0.0 15.1691    
cufflinks 24.7263 0.0 54.7569   High

0 Strain