Gene : Eucgr.A01566 E. grandis v2.0
Defline:  (1 of 1) 2.4.99.12 - Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase / Lipid IV(A) KDO transferase Genomic Order:  1222
Name:  ? Eucgr.A01566 Secondary Identifier:  ? PAC:32048522
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis KDOSYN-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01566 0.5kb upstream 0.5kb upstream 6245 true Chr01: 27450624-27456868 Eucalyptus grandis
Eucgr.A01566 0.5kb upstream 0.5kb upstream 500 false Chr01: 27456369-27456868 Eucalyptus grandis
Eucgr.A01566 0.5kb downstream 0.5kb downstream 6245 true Chr01: 27450124-27456368 Eucalyptus grandis
Eucgr.A01566 0.5kb downstream 0.5kb downstream 500 false Chr01: 27450124-27450623 Eucalyptus grandis
Eucgr.A01566 1.0kb upstream 1.0kb upstream 6745 true Chr01: 27450624-27457368 Eucalyptus grandis
Eucgr.A01566 1.0kb upstream 1.0kb upstream 1000 false Chr01: 27456369-27457368 Eucalyptus grandis
Eucgr.A01566 1.0kb downstream 1.0kb downstream 6745 true Chr01: 27449624-27456368 Eucalyptus grandis
Eucgr.A01566 1.0kb downstream 1.0kb downstream 1000 false Chr01: 27449624-27450623 Eucalyptus grandis
Eucgr.A01566 2.0kb upstream 2.0kb upstream 7745 true Chr01: 27450624-27458368 Eucalyptus grandis
Eucgr.A01566 2.0kb upstream 2.0kb upstream 2000 false Chr01: 27456369-27458368 Eucalyptus grandis
Eucgr.A01566 2.0kb downstream 2.0kb downstream 7745 true Chr01: 27448624-27456368 Eucalyptus grandis
Eucgr.A01566 2.0kb downstream 2.0kb downstream 2000 false Chr01: 27448624-27450623 Eucalyptus grandis
Eucgr.A01566 5.0kb upstream 5.0kb upstream 10745 true Chr01: 27450624-27461368 Eucalyptus grandis
Eucgr.A01566 5.0kb upstream 5.0kb upstream 5000 false Chr01: 27456369-27461368 Eucalyptus grandis
Eucgr.A01566 5.0kb downstream 5.0kb downstream 10745 true Chr01: 27445624-27456368 Eucalyptus grandis
Eucgr.A01566 5.0kb downstream 5.0kb downstream 5000 false Chr01: 27445624-27450623 Eucalyptus grandis
Eucgr.A01566 10.0kb upstream 10.0kb upstream 15745 true Chr01: 27450624-27466368 Eucalyptus grandis
Eucgr.A01566 10.0kb upstream 10.0kb upstream 10000 false Chr01: 27456369-27466368 Eucalyptus grandis
Eucgr.A01566 10.0kb downstream 10.0kb downstream 15745 true Chr01: 27440624-27456368 Eucalyptus grandis
Eucgr.A01566 10.0kb downstream 10.0kb downstream 10000 false Chr01: 27440624-27450623 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064068 5270 Rosid View MSA
123737995 5271 Pentapetalae View MSA
122793703 5272 Eudicot View MSA
122042607 5273 Angiosperm View MSA
121344444 5274 Embryophyte View MSA
123380045 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.621901 0.0 1.93476    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.09176 0.0 3.16549    
cufflinks 0.133224 0.0 0.501951 Low Low
cufflinks 1.53904 0.0 4.29909   High
cufflinks 0.504778 0.0 1.6234 Low  

0 Strain