Gene : Eucgr.A01999 E. grandis v2.0
Defline:  (1 of 3) PTHR21649//PTHR21649:SF20 - CHLOROPHYLL A/B BINDING PROTEIN Genomic Order:  1798
Name:  ? Eucgr.A01999 Secondary Identifier:  ? PAC:32047701
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01999 0.5kb upstream 0.5kb upstream 2037 true Chr01: 35420150-35422186 Eucalyptus grandis
Eucgr.A01999 0.5kb upstream 0.5kb upstream 500 false Chr01: 35421687-35422186 Eucalyptus grandis
Eucgr.A01999 0.5kb downstream 0.5kb downstream 2037 true Chr01: 35419650-35421686 Eucalyptus grandis
Eucgr.A01999 0.5kb downstream 0.5kb downstream 500 false Chr01: 35419650-35420149 Eucalyptus grandis
Eucgr.A01999 1.0kb upstream 1.0kb upstream 2537 true Chr01: 35420150-35422686 Eucalyptus grandis
Eucgr.A01999 1.0kb upstream 1.0kb upstream 1000 false Chr01: 35421687-35422686 Eucalyptus grandis
Eucgr.A01999 1.0kb downstream 1.0kb downstream 2537 true Chr01: 35419150-35421686 Eucalyptus grandis
Eucgr.A01999 1.0kb downstream 1.0kb downstream 1000 false Chr01: 35419150-35420149 Eucalyptus grandis
Eucgr.A01999 2.0kb upstream 2.0kb upstream 3537 true Chr01: 35420150-35423686 Eucalyptus grandis
Eucgr.A01999 2.0kb upstream 2.0kb upstream 2000 false Chr01: 35421687-35423686 Eucalyptus grandis
Eucgr.A01999 2.0kb downstream 2.0kb downstream 3537 true Chr01: 35418150-35421686 Eucalyptus grandis
Eucgr.A01999 2.0kb downstream 2.0kb downstream 2000 false Chr01: 35418150-35420149 Eucalyptus grandis
Eucgr.A01999 5.0kb upstream 5.0kb upstream 6537 true Chr01: 35420150-35426686 Eucalyptus grandis
Eucgr.A01999 5.0kb upstream 5.0kb upstream 5000 false Chr01: 35421687-35426686 Eucalyptus grandis
Eucgr.A01999 5.0kb downstream 5.0kb downstream 6537 true Chr01: 35415150-35421686 Eucalyptus grandis
Eucgr.A01999 5.0kb downstream 5.0kb downstream 5000 false Chr01: 35415150-35420149 Eucalyptus grandis
Eucgr.A01999 10.0kb upstream 10.0kb upstream 11537 true Chr01: 35420150-35431686 Eucalyptus grandis
Eucgr.A01999 10.0kb upstream 10.0kb upstream 10000 false Chr01: 35421687-35431686 Eucalyptus grandis
Eucgr.A01999 10.0kb downstream 10.0kb downstream 11537 true Chr01: 35410150-35421686 Eucalyptus grandis
Eucgr.A01999 10.0kb downstream 10.0kb downstream 10000 false Chr01: 35410150-35420149 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124051137 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.344591 0.0 1.17401 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.31595 0.0 3.7801    
cufflinks 2.31063 0.0 6.22271   High
cufflinks 0.687148 0.0 2.12539 Low  
cufflinks 0.556413 0.0 1.78946 Low  

0 Strain