Gene : Eucgr.A01927 E. grandis v2.0
Defline:  (1 of 1) PTHR11879//PTHR11879:SF18 - ASPARTATE AMINOTRANSFERASE Genomic Order:  1736
Name:  ? Eucgr.A01927 Secondary Identifier:  ? PAC:32047209
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ASPARTATE-DEG1-PWY Eucalyptus grandis pathologic  
Egrandis ASPARTATESYN-PWY Eucalyptus grandis pathologic  
Egrandis PWY-3001 Eucalyptus grandis pathologic  
Egrandis PWY-7115 Eucalyptus grandis pathologic  
Egrandis PWY-7117 Eucalyptus grandis pathologic  
Egrandis THRESYN-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01927 0.5kb upstream 0.5kb upstream 5459 true Chr01: 34580675-34586133 Eucalyptus grandis
Eucgr.A01927 0.5kb upstream 0.5kb upstream 500 false Chr01: 34585634-34586133 Eucalyptus grandis
Eucgr.A01927 0.5kb downstream 0.5kb downstream 5459 true Chr01: 34580175-34585633 Eucalyptus grandis
Eucgr.A01927 0.5kb downstream 0.5kb downstream 500 false Chr01: 34580175-34580674 Eucalyptus grandis
Eucgr.A01927 1.0kb upstream 1.0kb upstream 5959 true Chr01: 34580675-34586633 Eucalyptus grandis
Eucgr.A01927 1.0kb upstream 1.0kb upstream 1000 false Chr01: 34585634-34586633 Eucalyptus grandis
Eucgr.A01927 1.0kb downstream 1.0kb downstream 5959 true Chr01: 34579675-34585633 Eucalyptus grandis
Eucgr.A01927 1.0kb downstream 1.0kb downstream 1000 false Chr01: 34579675-34580674 Eucalyptus grandis
Eucgr.A01927 2.0kb upstream 2.0kb upstream 6959 true Chr01: 34580675-34587633 Eucalyptus grandis
Eucgr.A01927 2.0kb upstream 2.0kb upstream 2000 false Chr01: 34585634-34587633 Eucalyptus grandis
Eucgr.A01927 2.0kb downstream 2.0kb downstream 6959 true Chr01: 34578675-34585633 Eucalyptus grandis
Eucgr.A01927 2.0kb downstream 2.0kb downstream 2000 false Chr01: 34578675-34580674 Eucalyptus grandis
Eucgr.A01927 5.0kb upstream 5.0kb upstream 9959 true Chr01: 34580675-34590633 Eucalyptus grandis
Eucgr.A01927 5.0kb upstream 5.0kb upstream 5000 false Chr01: 34585634-34590633 Eucalyptus grandis
Eucgr.A01927 5.0kb downstream 5.0kb downstream 9959 true Chr01: 34575675-34585633 Eucalyptus grandis
Eucgr.A01927 5.0kb downstream 5.0kb downstream 5000 false Chr01: 34575675-34580674 Eucalyptus grandis
Eucgr.A01927 10.0kb upstream 10.0kb upstream 14959 true Chr01: 34580675-34595633 Eucalyptus grandis
Eucgr.A01927 10.0kb upstream 10.0kb upstream 10000 false Chr01: 34585634-34595633 Eucalyptus grandis
Eucgr.A01927 10.0kb downstream 10.0kb downstream 14959 true Chr01: 34570675-34585633 Eucalyptus grandis
Eucgr.A01927 10.0kb downstream 10.0kb downstream 10000 false Chr01: 34570675-34580674 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063482 5270 Rosid View MSA
123737145 5271 Pentapetalae View MSA
122793092 5272 Eudicot View MSA
122046072 5273 Angiosperm View MSA
121344214 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.5034 0.0 58.4489   High
cufflinks 16.1162 0.0 43.1914    
cufflinks 16.5874 0.0 47.4645    
cufflinks 13.7598 0.0 31.8646    
cufflinks 10.7439 0.0 25.6345   Low
cufflinks 14.1191 0.0 32.6611    

0 Strain