Gene : Eucgr.A01932 E. grandis v2.0
Defline:  (1 of 78) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1741
Name:  ? Eucgr.A01932 Secondary Identifier:  ? PAC:32046831
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01932 0.5kb upstream 0.5kb upstream 2126 true Chr01: 34630154-34632279 Eucalyptus grandis
Eucgr.A01932 0.5kb upstream 0.5kb upstream 500 false Chr01: 34631780-34632279 Eucalyptus grandis
Eucgr.A01932 0.5kb downstream 0.5kb downstream 2126 true Chr01: 34629654-34631779 Eucalyptus grandis
Eucgr.A01932 0.5kb downstream 0.5kb downstream 500 false Chr01: 34629654-34630153 Eucalyptus grandis
Eucgr.A01932 1.0kb upstream 1.0kb upstream 2626 true Chr01: 34630154-34632779 Eucalyptus grandis
Eucgr.A01932 1.0kb upstream 1.0kb upstream 1000 false Chr01: 34631780-34632779 Eucalyptus grandis
Eucgr.A01932 1.0kb downstream 1.0kb downstream 2626 true Chr01: 34629154-34631779 Eucalyptus grandis
Eucgr.A01932 1.0kb downstream 1.0kb downstream 1000 false Chr01: 34629154-34630153 Eucalyptus grandis
Eucgr.A01932 2.0kb upstream 2.0kb upstream 3626 true Chr01: 34630154-34633779 Eucalyptus grandis
Eucgr.A01932 2.0kb upstream 2.0kb upstream 2000 false Chr01: 34631780-34633779 Eucalyptus grandis
Eucgr.A01932 2.0kb downstream 2.0kb downstream 3626 true Chr01: 34628154-34631779 Eucalyptus grandis
Eucgr.A01932 2.0kb downstream 2.0kb downstream 2000 false Chr01: 34628154-34630153 Eucalyptus grandis
Eucgr.A01932 5.0kb upstream 5.0kb upstream 6626 true Chr01: 34630154-34636779 Eucalyptus grandis
Eucgr.A01932 5.0kb upstream 5.0kb upstream 5000 false Chr01: 34631780-34636779 Eucalyptus grandis
Eucgr.A01932 5.0kb downstream 5.0kb downstream 6626 true Chr01: 34625154-34631779 Eucalyptus grandis
Eucgr.A01932 5.0kb downstream 5.0kb downstream 5000 false Chr01: 34625154-34630153 Eucalyptus grandis
Eucgr.A01932 10.0kb upstream 10.0kb upstream 11626 true Chr01: 34630154-34641779 Eucalyptus grandis
Eucgr.A01932 10.0kb upstream 10.0kb upstream 10000 false Chr01: 34631780-34641779 Eucalyptus grandis
Eucgr.A01932 10.0kb downstream 10.0kb downstream 11626 true Chr01: 34620154-34631779 Eucalyptus grandis
Eucgr.A01932 10.0kb downstream 10.0kb downstream 10000 false Chr01: 34620154-34630153 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
124063254 5270 Rosid View MSA
123739998 5271 Pentapetalae View MSA
122787628 5272 Eudicot View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.573055 0.0 1.73555   Low
cufflinks 1.33456 0.0 3.66993    
cufflinks 1.07386 0.0 3.02016    
cufflinks 1.37115 0.0 3.74169    
cufflinks 3.7056 0.0 9.22026   High
cufflinks 0.738935 0.0 2.18472 Low  

0 Strain