Gene : Eucgr.B01988 E. grandis v2.0
Defline:  (1 of 3) 2.1.2.11 - 3-methyl-2-oxobutanoate hydroxymethyltransferase / Ketopantoate hydroxymethyltransferase Genomic Order:  1519
Name:  ? Eucgr.B01988 Secondary Identifier:  ? PAC:32061167
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PANTO-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B01988 0.5kb upstream 0.5kb upstream 3777 true Chr02: 36946054-36949830 Eucalyptus grandis
Eucgr.B01988 0.5kb upstream 0.5kb upstream 500 false Chr02: 36946054-36946553 Eucalyptus grandis
Eucgr.B01988 0.5kb downstream 0.5kb downstream 3777 true Chr02: 36946554-36950330 Eucalyptus grandis
Eucgr.B01988 0.5kb downstream 0.5kb downstream 500 false Chr02: 36949831-36950330 Eucalyptus grandis
Eucgr.B01988 1.0kb upstream 1.0kb upstream 4277 true Chr02: 36945554-36949830 Eucalyptus grandis
Eucgr.B01988 1.0kb upstream 1.0kb upstream 1000 false Chr02: 36945554-36946553 Eucalyptus grandis
Eucgr.B01988 1.0kb downstream 1.0kb downstream 4277 true Chr02: 36946554-36950830 Eucalyptus grandis
Eucgr.B01988 1.0kb downstream 1.0kb downstream 1000 false Chr02: 36949831-36950830 Eucalyptus grandis
Eucgr.B01988 2.0kb upstream 2.0kb upstream 5277 true Chr02: 36944554-36949830 Eucalyptus grandis
Eucgr.B01988 2.0kb upstream 2.0kb upstream 2000 false Chr02: 36944554-36946553 Eucalyptus grandis
Eucgr.B01988 2.0kb downstream 2.0kb downstream 5277 true Chr02: 36946554-36951830 Eucalyptus grandis
Eucgr.B01988 2.0kb downstream 2.0kb downstream 2000 false Chr02: 36949831-36951830 Eucalyptus grandis
Eucgr.B01988 5.0kb upstream 5.0kb upstream 8277 true Chr02: 36941554-36949830 Eucalyptus grandis
Eucgr.B01988 5.0kb upstream 5.0kb upstream 5000 false Chr02: 36941554-36946553 Eucalyptus grandis
Eucgr.B01988 5.0kb downstream 5.0kb downstream 8277 true Chr02: 36946554-36954830 Eucalyptus grandis
Eucgr.B01988 5.0kb downstream 5.0kb downstream 5000 false Chr02: 36949831-36954830 Eucalyptus grandis
Eucgr.B01988 10.0kb upstream 10.0kb upstream 13277 true Chr02: 36936554-36949830 Eucalyptus grandis
Eucgr.B01988 10.0kb upstream 10.0kb upstream 10000 false Chr02: 36936554-36946553 Eucalyptus grandis
Eucgr.B01988 10.0kb downstream 10.0kb downstream 13277 true Chr02: 36946554-36959830 Eucalyptus grandis
Eucgr.B01988 10.0kb downstream 10.0kb downstream 10000 false Chr02: 36949831-36959830 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063716 5270 Rosid View MSA
123736873 5271 Pentapetalae View MSA
122793216 5272 Eudicot View MSA
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.61193 0.0 15.7873    
cufflinks 1.14047 0.0 3.55131    
cufflinks 5.31445 0.0 12.981    
cufflinks 1.40101 0.0 4.19765    
cufflinks 0.268087 0.0 1.10324 Low Low
cufflinks 7.21001 0.0 17.081    

0 Strain