Gene : Eucgr.B02613 E. grandis v2.0
Defline:  (1 of 1) PTHR10315:SF45 - E3 UBIQUITIN-PROTEIN LIGASE Genomic Order:  2108
Name:  ? Eucgr.B02613 Secondary Identifier:  ? PAC:32060662
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7511 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B02613 0.5kb upstream 0.5kb upstream 3449 true Chr02: 46060700-46064148 Eucalyptus grandis
Eucgr.B02613 0.5kb upstream 0.5kb upstream 500 false Chr02: 46060700-46061199 Eucalyptus grandis
Eucgr.B02613 0.5kb downstream 0.5kb downstream 3449 true Chr02: 46061200-46064648 Eucalyptus grandis
Eucgr.B02613 0.5kb downstream 0.5kb downstream 500 false Chr02: 46064149-46064648 Eucalyptus grandis
Eucgr.B02613 1.0kb upstream 1.0kb upstream 3949 true Chr02: 46060200-46064148 Eucalyptus grandis
Eucgr.B02613 1.0kb upstream 1.0kb upstream 1000 false Chr02: 46060200-46061199 Eucalyptus grandis
Eucgr.B02613 1.0kb downstream 1.0kb downstream 3949 true Chr02: 46061200-46065148 Eucalyptus grandis
Eucgr.B02613 1.0kb downstream 1.0kb downstream 1000 false Chr02: 46064149-46065148 Eucalyptus grandis
Eucgr.B02613 2.0kb upstream 2.0kb upstream 4949 true Chr02: 46059200-46064148 Eucalyptus grandis
Eucgr.B02613 2.0kb upstream 2.0kb upstream 2000 false Chr02: 46059200-46061199 Eucalyptus grandis
Eucgr.B02613 2.0kb downstream 2.0kb downstream 4949 true Chr02: 46061200-46066148 Eucalyptus grandis
Eucgr.B02613 2.0kb downstream 2.0kb downstream 2000 false Chr02: 46064149-46066148 Eucalyptus grandis
Eucgr.B02613 5.0kb upstream 5.0kb upstream 7949 true Chr02: 46056200-46064148 Eucalyptus grandis
Eucgr.B02613 5.0kb upstream 5.0kb upstream 5000 false Chr02: 46056200-46061199 Eucalyptus grandis
Eucgr.B02613 5.0kb downstream 5.0kb downstream 7949 true Chr02: 46061200-46069148 Eucalyptus grandis
Eucgr.B02613 5.0kb downstream 5.0kb downstream 5000 false Chr02: 46064149-46069148 Eucalyptus grandis
Eucgr.B02613 10.0kb upstream 10.0kb upstream 12949 true Chr02: 46051200-46064148 Eucalyptus grandis
Eucgr.B02613 10.0kb upstream 10.0kb upstream 10000 false Chr02: 46051200-46061199 Eucalyptus grandis
Eucgr.B02613 10.0kb downstream 10.0kb downstream 12949 true Chr02: 46061200-46074148 Eucalyptus grandis
Eucgr.B02613 10.0kb downstream 10.0kb downstream 10000 false Chr02: 46064149-46074148 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124051515 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.9146 0.0 33.7583    
cufflinks 38.1197 0.0 86.0593    
cufflinks 14.5781 0.0 34.5028    
cufflinks 61.9387 0.0 144.003 High High
cufflinks 61.1132 0.0 142.157 High High
cufflinks 14.4168 0.0 34.7493    

0 Strain