Gene : Eucgr.B03444 E. grandis v2.0
Defline:  (1 of 2) PTHR31576:SF2 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B Genomic Order:  2536
Name:  ? Eucgr.B03444 Secondary Identifier:  ? PAC:32060277
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03444 0.5kb upstream 0.5kb upstream 8945 true Chr02: 52526895-52535839 Eucalyptus grandis
Eucgr.B03444 0.5kb upstream 0.5kb upstream 500 false Chr02: 52535340-52535839 Eucalyptus grandis
Eucgr.B03444 0.5kb downstream 0.5kb downstream 8945 true Chr02: 52526395-52535339 Eucalyptus grandis
Eucgr.B03444 0.5kb downstream 0.5kb downstream 500 false Chr02: 52526395-52526894 Eucalyptus grandis
Eucgr.B03444 1.0kb upstream 1.0kb upstream 9445 true Chr02: 52526895-52536339 Eucalyptus grandis
Eucgr.B03444 1.0kb upstream 1.0kb upstream 1000 false Chr02: 52535340-52536339 Eucalyptus grandis
Eucgr.B03444 1.0kb downstream 1.0kb downstream 9445 true Chr02: 52525895-52535339 Eucalyptus grandis
Eucgr.B03444 1.0kb downstream 1.0kb downstream 1000 false Chr02: 52525895-52526894 Eucalyptus grandis
Eucgr.B03444 2.0kb upstream 2.0kb upstream 10445 true Chr02: 52526895-52537339 Eucalyptus grandis
Eucgr.B03444 2.0kb upstream 2.0kb upstream 2000 false Chr02: 52535340-52537339 Eucalyptus grandis
Eucgr.B03444 2.0kb downstream 2.0kb downstream 10445 true Chr02: 52524895-52535339 Eucalyptus grandis
Eucgr.B03444 2.0kb downstream 2.0kb downstream 2000 false Chr02: 52524895-52526894 Eucalyptus grandis
Eucgr.B03444 5.0kb upstream 5.0kb upstream 13445 true Chr02: 52526895-52540339 Eucalyptus grandis
Eucgr.B03444 5.0kb upstream 5.0kb upstream 5000 false Chr02: 52535340-52540339 Eucalyptus grandis
Eucgr.B03444 5.0kb downstream 5.0kb downstream 13445 true Chr02: 52521895-52535339 Eucalyptus grandis
Eucgr.B03444 5.0kb downstream 5.0kb downstream 5000 false Chr02: 52521895-52526894 Eucalyptus grandis
Eucgr.B03444 10.0kb upstream 10.0kb upstream 18445 true Chr02: 52526895-52545339 Eucalyptus grandis
Eucgr.B03444 10.0kb upstream 10.0kb upstream 10000 false Chr02: 52535340-52545339 Eucalyptus grandis
Eucgr.B03444 10.0kb downstream 10.0kb downstream 18445 true Chr02: 52516895-52535339 Eucalyptus grandis
Eucgr.B03444 10.0kb downstream 10.0kb downstream 10000 false Chr02: 52516895-52526894 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124047803 5270 Rosid Singleton cluster - no MSA
123646864 5271 Pentapetalae View MSA
122796533 5272 Eudicot View MSA
122050673 5273 Angiosperm View MSA
121345414 5274 Embryophyte View MSA
123427215 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.00216133 0.0 0.0495434 Low Low
cufflinks 0.0584043 0.0 0.29517 Low  
cufflinks 0.0852914 0.0 0.378023 Low  
cufflinks 0.0587683 0.0 0.296267 Low  
cufflinks 0.024739 0.0 0.181095 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain