Gene : Eucgr.B03346 E. grandis v2.0
Defline:  (1 of 1) PTHR30544//PTHR30544:SF3 - 23S RRNA METHYLTRANSFERASE Genomic Order:  2627
Name:  ? Eucgr.B03346 Secondary Identifier:  ? PAC:32058379
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03346 0.5kb upstream 0.5kb upstream 4777 true Chr02: 53380676-53385452 Eucalyptus grandis
Eucgr.B03346 0.5kb upstream 0.5kb upstream 500 false Chr02: 53384953-53385452 Eucalyptus grandis
Eucgr.B03346 0.5kb downstream 0.5kb downstream 4777 true Chr02: 53380176-53384952 Eucalyptus grandis
Eucgr.B03346 0.5kb downstream 0.5kb downstream 500 false Chr02: 53380176-53380675 Eucalyptus grandis
Eucgr.B03346 1.0kb upstream 1.0kb upstream 5277 true Chr02: 53380676-53385952 Eucalyptus grandis
Eucgr.B03346 1.0kb upstream 1.0kb upstream 1000 false Chr02: 53384953-53385952 Eucalyptus grandis
Eucgr.B03346 1.0kb downstream 1.0kb downstream 5277 true Chr02: 53379676-53384952 Eucalyptus grandis
Eucgr.B03346 1.0kb downstream 1.0kb downstream 1000 false Chr02: 53379676-53380675 Eucalyptus grandis
Eucgr.B03346 2.0kb upstream 2.0kb upstream 6277 true Chr02: 53380676-53386952 Eucalyptus grandis
Eucgr.B03346 2.0kb upstream 2.0kb upstream 2000 false Chr02: 53384953-53386952 Eucalyptus grandis
Eucgr.B03346 2.0kb downstream 2.0kb downstream 6277 true Chr02: 53378676-53384952 Eucalyptus grandis
Eucgr.B03346 2.0kb downstream 2.0kb downstream 2000 false Chr02: 53378676-53380675 Eucalyptus grandis
Eucgr.B03346 5.0kb upstream 5.0kb upstream 9277 true Chr02: 53380676-53389952 Eucalyptus grandis
Eucgr.B03346 5.0kb upstream 5.0kb upstream 5000 false Chr02: 53384953-53389952 Eucalyptus grandis
Eucgr.B03346 5.0kb downstream 5.0kb downstream 9277 true Chr02: 53375676-53384952 Eucalyptus grandis
Eucgr.B03346 5.0kb downstream 5.0kb downstream 5000 false Chr02: 53375676-53380675 Eucalyptus grandis
Eucgr.B03346 10.0kb upstream 10.0kb upstream 14277 true Chr02: 53380676-53394952 Eucalyptus grandis
Eucgr.B03346 10.0kb upstream 10.0kb upstream 10000 false Chr02: 53384953-53394952 Eucalyptus grandis
Eucgr.B03346 10.0kb downstream 10.0kb downstream 14277 true Chr02: 53370676-53384952 Eucalyptus grandis
Eucgr.B03346 10.0kb downstream 10.0kb downstream 10000 false Chr02: 53370676-53380675 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065414 5270 Rosid View MSA
123740690 5271 Pentapetalae View MSA
122787851 5272 Eudicot View MSA
122043195 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346291 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.49848 0.0 8.69295    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.9159 0.0 5.04216    
cufflinks 0.449908 0.0 1.37195   Low
cufflinks 0.618199 0.0 1.82371 Low  
cufflinks 7.36491 0.0 17.1427   High

0 Strain