Gene : Eucgr.B03197 E. grandis v2.0
Defline:  (1 of 1) PTHR21230//PTHR21230:SF32 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED Genomic Order:  2508
Name:  ? Eucgr.B03197 Secondary Identifier:  ? PAC:32061754
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03197 0.5kb upstream 0.5kb upstream 3277 true Chr02: 52309426-52312702 Eucalyptus grandis
Eucgr.B03197 0.5kb upstream 0.5kb upstream 500 false Chr02: 52309426-52309925 Eucalyptus grandis
Eucgr.B03197 0.5kb downstream 0.5kb downstream 3277 true Chr02: 52309926-52313202 Eucalyptus grandis
Eucgr.B03197 0.5kb downstream 0.5kb downstream 500 false Chr02: 52312703-52313202 Eucalyptus grandis
Eucgr.B03197 1.0kb upstream 1.0kb upstream 3777 true Chr02: 52308926-52312702 Eucalyptus grandis
Eucgr.B03197 1.0kb upstream 1.0kb upstream 1000 false Chr02: 52308926-52309925 Eucalyptus grandis
Eucgr.B03197 1.0kb downstream 1.0kb downstream 3777 true Chr02: 52309926-52313702 Eucalyptus grandis
Eucgr.B03197 1.0kb downstream 1.0kb downstream 1000 false Chr02: 52312703-52313702 Eucalyptus grandis
Eucgr.B03197 2.0kb upstream 2.0kb upstream 4777 true Chr02: 52307926-52312702 Eucalyptus grandis
Eucgr.B03197 2.0kb upstream 2.0kb upstream 2000 false Chr02: 52307926-52309925 Eucalyptus grandis
Eucgr.B03197 2.0kb downstream 2.0kb downstream 4777 true Chr02: 52309926-52314702 Eucalyptus grandis
Eucgr.B03197 2.0kb downstream 2.0kb downstream 2000 false Chr02: 52312703-52314702 Eucalyptus grandis
Eucgr.B03197 5.0kb upstream 5.0kb upstream 7777 true Chr02: 52304926-52312702 Eucalyptus grandis
Eucgr.B03197 5.0kb upstream 5.0kb upstream 5000 false Chr02: 52304926-52309925 Eucalyptus grandis
Eucgr.B03197 5.0kb downstream 5.0kb downstream 7777 true Chr02: 52309926-52317702 Eucalyptus grandis
Eucgr.B03197 5.0kb downstream 5.0kb downstream 5000 false Chr02: 52312703-52317702 Eucalyptus grandis
Eucgr.B03197 10.0kb upstream 10.0kb upstream 12777 true Chr02: 52299926-52312702 Eucalyptus grandis
Eucgr.B03197 10.0kb upstream 10.0kb upstream 10000 false Chr02: 52299926-52309925 Eucalyptus grandis
Eucgr.B03197 10.0kb downstream 10.0kb downstream 12777 true Chr02: 52309926-52322702 Eucalyptus grandis
Eucgr.B03197 10.0kb downstream 10.0kb downstream 10000 false Chr02: 52312703-52322702 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061213 5270 Rosid View MSA
123741301 5271 Pentapetalae View MSA
122797628 5272 Eudicot View MSA
122045061 5273 Angiosperm View MSA
121345053 5274 Embryophyte View MSA
123428626 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.0587 0.0 58.4389    
cufflinks 30.2139 0.0 67.3755    
cufflinks 18.875 0.0 43.0922   Low
cufflinks 36.3982 0.0 80.7835   High
cufflinks 24.3317 0.0 54.7845    
cufflinks 21.2807 0.0 48.3207    

0 Strain