Gene : Eucgr.C00111 E. grandis v2.0
Defline:  (1 of 3) PTHR11954:SF20 - MACROPHAGE MIGRATION INHIBITORY FACTOR FAMILY PROTEIN Genomic Order:  52
Name:  ? Eucgr.C00111 Secondary Identifier:  ? PAC:32040203
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6498 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00111 0.5kb upstream 0.5kb upstream 2506 true Chr03: 737379-739884 Eucalyptus grandis
Eucgr.C00111 0.5kb upstream 0.5kb upstream 500 false Chr03: 739385-739884 Eucalyptus grandis
Eucgr.C00111 0.5kb downstream 0.5kb downstream 2506 true Chr03: 736879-739384 Eucalyptus grandis
Eucgr.C00111 0.5kb downstream 0.5kb downstream 500 false Chr03: 736879-737378 Eucalyptus grandis
Eucgr.C00111 1.0kb upstream 1.0kb upstream 3006 true Chr03: 737379-740384 Eucalyptus grandis
Eucgr.C00111 1.0kb upstream 1.0kb upstream 1000 false Chr03: 739385-740384 Eucalyptus grandis
Eucgr.C00111 1.0kb downstream 1.0kb downstream 3006 true Chr03: 736379-739384 Eucalyptus grandis
Eucgr.C00111 1.0kb downstream 1.0kb downstream 1000 false Chr03: 736379-737378 Eucalyptus grandis
Eucgr.C00111 2.0kb upstream 2.0kb upstream 4006 true Chr03: 737379-741384 Eucalyptus grandis
Eucgr.C00111 2.0kb upstream 2.0kb upstream 2000 false Chr03: 739385-741384 Eucalyptus grandis
Eucgr.C00111 2.0kb downstream 2.0kb downstream 4006 true Chr03: 735379-739384 Eucalyptus grandis
Eucgr.C00111 2.0kb downstream 2.0kb downstream 2000 false Chr03: 735379-737378 Eucalyptus grandis
Eucgr.C00111 5.0kb upstream 5.0kb upstream 7006 true Chr03: 737379-744384 Eucalyptus grandis
Eucgr.C00111 5.0kb upstream 5.0kb upstream 5000 false Chr03: 739385-744384 Eucalyptus grandis
Eucgr.C00111 5.0kb downstream 5.0kb downstream 7006 true Chr03: 732379-739384 Eucalyptus grandis
Eucgr.C00111 5.0kb downstream 5.0kb downstream 5000 false Chr03: 732379-737378 Eucalyptus grandis
Eucgr.C00111 10.0kb upstream 10.0kb upstream 12006 true Chr03: 737379-749384 Eucalyptus grandis
Eucgr.C00111 10.0kb upstream 10.0kb upstream 10000 false Chr03: 739385-749384 Eucalyptus grandis
Eucgr.C00111 10.0kb downstream 10.0kb downstream 12006 true Chr03: 727379-739384 Eucalyptus grandis
Eucgr.C00111 10.0kb downstream 10.0kb downstream 10000 false Chr03: 727379-737378 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068416 5270 Rosid View MSA
123740780 5271 Pentapetalae View MSA
122787200 5272 Eudicot View MSA
122044871 5273 Angiosperm View MSA
121349175 5274 Embryophyte View MSA
123424544 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.58364 0.0 24.7761    
cufflinks 1.19804 0.0 3.85704   Low
cufflinks 3.55862 0.0 10.1803    
cufflinks 1.96932 0.0 6.00526    
cufflinks 11.2198 0.0 28.5157    
cufflinks 25.5414 0.0 60.2008   High

0 Strain