Gene : Eucgr.B03979 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3234
Name:  ? Eucgr.B03979 Secondary Identifier:  ? PAC:32061703
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B03979 0.5kb upstream 0.5kb upstream 3311 true Chr02: 58924994-58928304 Eucalyptus grandis
Eucgr.B03979 0.5kb upstream 0.5kb upstream 500 false Chr02: 58924994-58925493 Eucalyptus grandis
Eucgr.B03979 0.5kb downstream 0.5kb downstream 3311 true Chr02: 58925494-58928804 Eucalyptus grandis
Eucgr.B03979 0.5kb downstream 0.5kb downstream 500 false Chr02: 58928305-58928804 Eucalyptus grandis
Eucgr.B03979 1.0kb upstream 1.0kb upstream 3811 true Chr02: 58924494-58928304 Eucalyptus grandis
Eucgr.B03979 1.0kb upstream 1.0kb upstream 1000 false Chr02: 58924494-58925493 Eucalyptus grandis
Eucgr.B03979 1.0kb downstream 1.0kb downstream 3811 true Chr02: 58925494-58929304 Eucalyptus grandis
Eucgr.B03979 1.0kb downstream 1.0kb downstream 1000 false Chr02: 58928305-58929304 Eucalyptus grandis
Eucgr.B03979 2.0kb upstream 2.0kb upstream 4811 true Chr02: 58923494-58928304 Eucalyptus grandis
Eucgr.B03979 2.0kb upstream 2.0kb upstream 2000 false Chr02: 58923494-58925493 Eucalyptus grandis
Eucgr.B03979 2.0kb downstream 2.0kb downstream 4811 true Chr02: 58925494-58930304 Eucalyptus grandis
Eucgr.B03979 2.0kb downstream 2.0kb downstream 2000 false Chr02: 58928305-58930304 Eucalyptus grandis
Eucgr.B03979 5.0kb upstream 5.0kb upstream 7811 true Chr02: 58920494-58928304 Eucalyptus grandis
Eucgr.B03979 5.0kb upstream 5.0kb upstream 5000 false Chr02: 58920494-58925493 Eucalyptus grandis
Eucgr.B03979 5.0kb downstream 5.0kb downstream 7811 true Chr02: 58925494-58933304 Eucalyptus grandis
Eucgr.B03979 5.0kb downstream 5.0kb downstream 5000 false Chr02: 58928305-58933304 Eucalyptus grandis
Eucgr.B03979 10.0kb upstream 10.0kb upstream 12811 true Chr02: 58915494-58928304 Eucalyptus grandis
Eucgr.B03979 10.0kb upstream 10.0kb upstream 10000 false Chr02: 58915494-58925493 Eucalyptus grandis
Eucgr.B03979 10.0kb downstream 10.0kb downstream 12811 true Chr02: 58925494-58938304 Eucalyptus grandis
Eucgr.B03979 10.0kb downstream 10.0kb downstream 10000 false Chr02: 58928305-58938304 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064128 5270 Rosid View MSA
123740328 5271 Pentapetalae View MSA
122789927 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.965372 0.0 2.63861    
cufflinks 0.432207 0.0 1.27901 Low  
cufflinks 1.19163 0.0 3.17801   High
cufflinks 0.447182 0.0 1.31203    
cufflinks 0.299903 0.0 0.927617 Low Low
cufflinks 0.709861 0.0 2.00874 Low  

0 Strain