Gene : Eucgr.C00548 E. grandis v2.0
Defline:  (1 of 2) PTHR12532:SF0 - TRANSCRIPTIONAL REGULATORY PROTEIN HAH1-RELATED Genomic Order:  392
Name:  ? Eucgr.C00548 Secondary Identifier:  ? PAC:32038243
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00548 0.5kb upstream 0.5kb upstream 2176 true Chr03: 8733375-8735550 Eucalyptus grandis
Eucgr.C00548 0.5kb upstream 0.5kb upstream 500 false Chr03: 8735051-8735550 Eucalyptus grandis
Eucgr.C00548 0.5kb downstream 0.5kb downstream 2176 true Chr03: 8732875-8735050 Eucalyptus grandis
Eucgr.C00548 0.5kb downstream 0.5kb downstream 500 false Chr03: 8732875-8733374 Eucalyptus grandis
Eucgr.C00548 1.0kb upstream 1.0kb upstream 2676 true Chr03: 8733375-8736050 Eucalyptus grandis
Eucgr.C00548 1.0kb upstream 1.0kb upstream 1000 false Chr03: 8735051-8736050 Eucalyptus grandis
Eucgr.C00548 1.0kb downstream 1.0kb downstream 2676 true Chr03: 8732375-8735050 Eucalyptus grandis
Eucgr.C00548 1.0kb downstream 1.0kb downstream 1000 false Chr03: 8732375-8733374 Eucalyptus grandis
Eucgr.C00548 2.0kb upstream 2.0kb upstream 3676 true Chr03: 8733375-8737050 Eucalyptus grandis
Eucgr.C00548 2.0kb upstream 2.0kb upstream 2000 false Chr03: 8735051-8737050 Eucalyptus grandis
Eucgr.C00548 2.0kb downstream 2.0kb downstream 3676 true Chr03: 8731375-8735050 Eucalyptus grandis
Eucgr.C00548 2.0kb downstream 2.0kb downstream 2000 false Chr03: 8731375-8733374 Eucalyptus grandis
Eucgr.C00548 5.0kb upstream 5.0kb upstream 6676 true Chr03: 8733375-8740050 Eucalyptus grandis
Eucgr.C00548 5.0kb upstream 5.0kb upstream 5000 false Chr03: 8735051-8740050 Eucalyptus grandis
Eucgr.C00548 5.0kb downstream 5.0kb downstream 6676 true Chr03: 8728375-8735050 Eucalyptus grandis
Eucgr.C00548 5.0kb downstream 5.0kb downstream 5000 false Chr03: 8728375-8733374 Eucalyptus grandis
Eucgr.C00548 10.0kb upstream 10.0kb upstream 11676 true Chr03: 8733375-8745050 Eucalyptus grandis
Eucgr.C00548 10.0kb upstream 10.0kb upstream 10000 false Chr03: 8735051-8745050 Eucalyptus grandis
Eucgr.C00548 10.0kb downstream 10.0kb downstream 11676 true Chr03: 8723375-8735050 Eucalyptus grandis
Eucgr.C00548 10.0kb downstream 10.0kb downstream 10000 false Chr03: 8723375-8733374 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060394 5270 Rosid View MSA
123737611 5271 Pentapetalae View MSA
122791742 5272 Eudicot View MSA
122042716 5273 Angiosperm View MSA
121345418 5274 Embryophyte View MSA
123424346 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.82374 0.0 24.71    
cufflinks 5.33992 0.0 14.1764   Low
cufflinks 7.01378 0.0 18.2078    
cufflinks 8.59802 0.0 21.793    
cufflinks 26.2466 0.0 60.1918   High
cufflinks 17.0556 0.0 40.8023    

0 Strain