Gene : Eucgr.C00197 E. grandis v2.0
Defline:  (1 of 1) PTHR12818:SF0 - NEF-ASSOCIATED PROTEIN 1 Genomic Order:  132
Name:  ? Eucgr.C00197 Secondary Identifier:  ? PAC:32038133
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00197 0.5kb upstream 0.5kb upstream 5519 true Chr03: 1543293-1548811 Eucalyptus grandis
Eucgr.C00197 0.5kb upstream 0.5kb upstream 500 false Chr03: 1548312-1548811 Eucalyptus grandis
Eucgr.C00197 0.5kb downstream 0.5kb downstream 5519 true Chr03: 1542793-1548311 Eucalyptus grandis
Eucgr.C00197 0.5kb downstream 0.5kb downstream 500 false Chr03: 1542793-1543292 Eucalyptus grandis
Eucgr.C00197 1.0kb upstream 1.0kb upstream 6019 true Chr03: 1543293-1549311 Eucalyptus grandis
Eucgr.C00197 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1548312-1549311 Eucalyptus grandis
Eucgr.C00197 1.0kb downstream 1.0kb downstream 6019 true Chr03: 1542293-1548311 Eucalyptus grandis
Eucgr.C00197 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1542293-1543292 Eucalyptus grandis
Eucgr.C00197 2.0kb upstream 2.0kb upstream 7019 true Chr03: 1543293-1550311 Eucalyptus grandis
Eucgr.C00197 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1548312-1550311 Eucalyptus grandis
Eucgr.C00197 2.0kb downstream 2.0kb downstream 7019 true Chr03: 1541293-1548311 Eucalyptus grandis
Eucgr.C00197 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1541293-1543292 Eucalyptus grandis
Eucgr.C00197 5.0kb upstream 5.0kb upstream 10019 true Chr03: 1543293-1553311 Eucalyptus grandis
Eucgr.C00197 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1548312-1553311 Eucalyptus grandis
Eucgr.C00197 5.0kb downstream 5.0kb downstream 10019 true Chr03: 1538293-1548311 Eucalyptus grandis
Eucgr.C00197 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1538293-1543292 Eucalyptus grandis
Eucgr.C00197 10.0kb upstream 10.0kb upstream 15019 true Chr03: 1543293-1558311 Eucalyptus grandis
Eucgr.C00197 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1548312-1558311 Eucalyptus grandis
Eucgr.C00197 10.0kb downstream 10.0kb downstream 15019 true Chr03: 1533293-1548311 Eucalyptus grandis
Eucgr.C00197 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1533293-1543292 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061130 5270 Rosid View MSA
123737004 5271 Pentapetalae View MSA
122788525 5272 Eudicot View MSA
122041749 5273 Angiosperm View MSA
121344113 5274 Embryophyte View MSA
123423900 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.8603 0.0 55.4706   High
cufflinks 6.06283 0.0 15.5027    
cufflinks 14.8054 0.0 39.5521    
cufflinks 5.44694 0.0 13.9207   Low
cufflinks 7.54881 0.0 22.6974    
cufflinks 9.98311 0.0 26.9202    

0 Strain