Gene : Eucgr.C00820 E. grandis v2.0
Defline:  (1 of 17) PTHR22893:SF67 - 12-OXOPHYTODIENOATE REDUCTASE 3 Genomic Order:  674
Name:  ? Eucgr.C00820 Secondary Identifier:  ? PAC:32038798
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-735 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00820 0.5kb upstream 0.5kb upstream 7597 true Chr03: 13682336-13689932 Eucalyptus grandis
Eucgr.C00820 0.5kb upstream 0.5kb upstream 500 false Chr03: 13689433-13689932 Eucalyptus grandis
Eucgr.C00820 0.5kb downstream 0.5kb downstream 7597 true Chr03: 13681836-13689432 Eucalyptus grandis
Eucgr.C00820 0.5kb downstream 0.5kb downstream 500 false Chr03: 13681836-13682335 Eucalyptus grandis
Eucgr.C00820 1.0kb upstream 1.0kb upstream 8097 true Chr03: 13682336-13690432 Eucalyptus grandis
Eucgr.C00820 1.0kb upstream 1.0kb upstream 1000 false Chr03: 13689433-13690432 Eucalyptus grandis
Eucgr.C00820 1.0kb downstream 1.0kb downstream 8097 true Chr03: 13681336-13689432 Eucalyptus grandis
Eucgr.C00820 1.0kb downstream 1.0kb downstream 1000 false Chr03: 13681336-13682335 Eucalyptus grandis
Eucgr.C00820 2.0kb upstream 2.0kb upstream 9097 true Chr03: 13682336-13691432 Eucalyptus grandis
Eucgr.C00820 2.0kb upstream 2.0kb upstream 2000 false Chr03: 13689433-13691432 Eucalyptus grandis
Eucgr.C00820 2.0kb downstream 2.0kb downstream 9097 true Chr03: 13680336-13689432 Eucalyptus grandis
Eucgr.C00820 2.0kb downstream 2.0kb downstream 2000 false Chr03: 13680336-13682335 Eucalyptus grandis
Eucgr.C00820 5.0kb upstream 5.0kb upstream 12097 true Chr03: 13682336-13694432 Eucalyptus grandis
Eucgr.C00820 5.0kb upstream 5.0kb upstream 5000 false Chr03: 13689433-13694432 Eucalyptus grandis
Eucgr.C00820 5.0kb downstream 5.0kb downstream 12097 true Chr03: 13677336-13689432 Eucalyptus grandis
Eucgr.C00820 5.0kb downstream 5.0kb downstream 5000 false Chr03: 13677336-13682335 Eucalyptus grandis
Eucgr.C00820 10.0kb upstream 10.0kb upstream 17097 true Chr03: 13682336-13699432 Eucalyptus grandis
Eucgr.C00820 10.0kb upstream 10.0kb upstream 10000 false Chr03: 13689433-13699432 Eucalyptus grandis
Eucgr.C00820 10.0kb downstream 10.0kb downstream 17097 true Chr03: 13672336-13689432 Eucalyptus grandis
Eucgr.C00820 10.0kb downstream 10.0kb downstream 10000 false Chr03: 13672336-13682335 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067438 5270 Rosid View MSA
123752843 5271 Pentapetalae View MSA
122793200 5272 Eudicot View MSA
122045758 5273 Angiosperm View MSA
121351640 5274 Embryophyte View MSA
123428487 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 64.4415 0.0 190.964 High High
cufflinks 2.83855 0.0 8.48195   Low
cufflinks 72.2941 0.0 213.181 High High
cufflinks 14.0201 0.0 31.6023    
cufflinks 12.4698 0.0 32.1635    
cufflinks 21.8306 0.0 55.6126    

0 Strain