Gene : Eucgr.C00786 E. grandis v2.0
Defline:  (1 of 45) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  643
Name:  ? Eucgr.C00786 Secondary Identifier:  ? PAC:32038057
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00786 0.5kb upstream 0.5kb upstream 5726 true Chr03: 13234842-13240567 Eucalyptus grandis
Eucgr.C00786 0.5kb upstream 0.5kb upstream 500 false Chr03: 13240068-13240567 Eucalyptus grandis
Eucgr.C00786 0.5kb downstream 0.5kb downstream 5726 true Chr03: 13234342-13240067 Eucalyptus grandis
Eucgr.C00786 0.5kb downstream 0.5kb downstream 500 false Chr03: 13234342-13234841 Eucalyptus grandis
Eucgr.C00786 1.0kb upstream 1.0kb upstream 6226 true Chr03: 13234842-13241067 Eucalyptus grandis
Eucgr.C00786 1.0kb upstream 1.0kb upstream 1000 false Chr03: 13240068-13241067 Eucalyptus grandis
Eucgr.C00786 1.0kb downstream 1.0kb downstream 6226 true Chr03: 13233842-13240067 Eucalyptus grandis
Eucgr.C00786 1.0kb downstream 1.0kb downstream 1000 false Chr03: 13233842-13234841 Eucalyptus grandis
Eucgr.C00786 2.0kb upstream 2.0kb upstream 7226 true Chr03: 13234842-13242067 Eucalyptus grandis
Eucgr.C00786 2.0kb upstream 2.0kb upstream 2000 false Chr03: 13240068-13242067 Eucalyptus grandis
Eucgr.C00786 2.0kb downstream 2.0kb downstream 7226 true Chr03: 13232842-13240067 Eucalyptus grandis
Eucgr.C00786 2.0kb downstream 2.0kb downstream 2000 false Chr03: 13232842-13234841 Eucalyptus grandis
Eucgr.C00786 5.0kb upstream 5.0kb upstream 10226 true Chr03: 13234842-13245067 Eucalyptus grandis
Eucgr.C00786 5.0kb upstream 5.0kb upstream 5000 false Chr03: 13240068-13245067 Eucalyptus grandis
Eucgr.C00786 5.0kb downstream 5.0kb downstream 10226 true Chr03: 13229842-13240067 Eucalyptus grandis
Eucgr.C00786 5.0kb downstream 5.0kb downstream 5000 false Chr03: 13229842-13234841 Eucalyptus grandis
Eucgr.C00786 10.0kb upstream 10.0kb upstream 15226 true Chr03: 13234842-13250067 Eucalyptus grandis
Eucgr.C00786 10.0kb upstream 10.0kb upstream 10000 false Chr03: 13240068-13250067 Eucalyptus grandis
Eucgr.C00786 10.0kb downstream 10.0kb downstream 15226 true Chr03: 13224842-13240067 Eucalyptus grandis
Eucgr.C00786 10.0kb downstream 10.0kb downstream 10000 false Chr03: 13224842-13234841 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
124066643 5270 Rosid View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.6176 0.0 34.7167    
cufflinks 299.969 0.0 810.782 High High
cufflinks 12.8773 0.0 28.807    
cufflinks 227.236 0.0 589.141 High High
cufflinks 26.4866 0.0 58.6023    
cufflinks 21.456 0.0 47.4544    

0 Strain