Gene : Eucgr.C00623 E. grandis v2.0
Defline:  (1 of 2) PTHR12899//PTHR12899:SF4 - 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL Genomic Order:  501
Name:  ? Eucgr.C00623 Secondary Identifier:  ? PAC:32035979
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00623 0.5kb upstream 0.5kb upstream 2189 true Chr03: 11627332-11629520 Eucalyptus grandis
Eucgr.C00623 0.5kb upstream 0.5kb upstream 500 false Chr03: 11629021-11629520 Eucalyptus grandis
Eucgr.C00623 0.5kb downstream 0.5kb downstream 2189 true Chr03: 11626832-11629020 Eucalyptus grandis
Eucgr.C00623 0.5kb downstream 0.5kb downstream 500 false Chr03: 11626832-11627331 Eucalyptus grandis
Eucgr.C00623 1.0kb upstream 1.0kb upstream 2689 true Chr03: 11627332-11630020 Eucalyptus grandis
Eucgr.C00623 1.0kb upstream 1.0kb upstream 1000 false Chr03: 11629021-11630020 Eucalyptus grandis
Eucgr.C00623 1.0kb downstream 1.0kb downstream 2689 true Chr03: 11626332-11629020 Eucalyptus grandis
Eucgr.C00623 1.0kb downstream 1.0kb downstream 1000 false Chr03: 11626332-11627331 Eucalyptus grandis
Eucgr.C00623 2.0kb upstream 2.0kb upstream 3689 true Chr03: 11627332-11631020 Eucalyptus grandis
Eucgr.C00623 2.0kb upstream 2.0kb upstream 2000 false Chr03: 11629021-11631020 Eucalyptus grandis
Eucgr.C00623 2.0kb downstream 2.0kb downstream 3689 true Chr03: 11625332-11629020 Eucalyptus grandis
Eucgr.C00623 2.0kb downstream 2.0kb downstream 2000 false Chr03: 11625332-11627331 Eucalyptus grandis
Eucgr.C00623 5.0kb upstream 5.0kb upstream 6689 true Chr03: 11627332-11634020 Eucalyptus grandis
Eucgr.C00623 5.0kb upstream 5.0kb upstream 5000 false Chr03: 11629021-11634020 Eucalyptus grandis
Eucgr.C00623 5.0kb downstream 5.0kb downstream 6689 true Chr03: 11622332-11629020 Eucalyptus grandis
Eucgr.C00623 5.0kb downstream 5.0kb downstream 5000 false Chr03: 11622332-11627331 Eucalyptus grandis
Eucgr.C00623 10.0kb upstream 10.0kb upstream 11689 true Chr03: 11627332-11639020 Eucalyptus grandis
Eucgr.C00623 10.0kb upstream 10.0kb upstream 10000 false Chr03: 11629021-11639020 Eucalyptus grandis
Eucgr.C00623 10.0kb downstream 10.0kb downstream 11689 true Chr03: 11617332-11629020 Eucalyptus grandis
Eucgr.C00623 10.0kb downstream 10.0kb downstream 10000 false Chr03: 11617332-11627331 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065867 5270 Rosid View MSA
123736838 5271 Pentapetalae View MSA
122788352 5272 Eudicot View MSA
122047564 5273 Angiosperm View MSA
121310762 5274 Embryophyte View MSA
123348169 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.45079 0.0 14.3549    
cufflinks 4.07253 0.0 10.9539    
cufflinks 3.44539 0.0 9.47207    
cufflinks 3.12507 0.0 8.66104    
cufflinks 7.62253 0.0 19.373   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain