Gene : Eucgr.C01147 E. grandis v2.0
Defline:  (1 of 6) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  973
Name:  ? Eucgr.C01147 Secondary Identifier:  ? PAC:32037355
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C01147 0.5kb upstream 0.5kb upstream 1567 true Chr03: 18326157-18327723 Eucalyptus grandis
Eucgr.C01147 0.5kb upstream 0.5kb upstream 500 false Chr03: 18326157-18326656 Eucalyptus grandis
Eucgr.C01147 0.5kb downstream 0.5kb downstream 1567 true Chr03: 18326657-18328223 Eucalyptus grandis
Eucgr.C01147 0.5kb downstream 0.5kb downstream 500 false Chr03: 18327724-18328223 Eucalyptus grandis
Eucgr.C01147 1.0kb upstream 1.0kb upstream 2067 true Chr03: 18325657-18327723 Eucalyptus grandis
Eucgr.C01147 1.0kb upstream 1.0kb upstream 1000 false Chr03: 18325657-18326656 Eucalyptus grandis
Eucgr.C01147 1.0kb downstream 1.0kb downstream 2067 true Chr03: 18326657-18328723 Eucalyptus grandis
Eucgr.C01147 1.0kb downstream 1.0kb downstream 1000 false Chr03: 18327724-18328723 Eucalyptus grandis
Eucgr.C01147 2.0kb upstream 2.0kb upstream 3067 true Chr03: 18324657-18327723 Eucalyptus grandis
Eucgr.C01147 2.0kb upstream 2.0kb upstream 2000 false Chr03: 18324657-18326656 Eucalyptus grandis
Eucgr.C01147 2.0kb downstream 2.0kb downstream 3067 true Chr03: 18326657-18329723 Eucalyptus grandis
Eucgr.C01147 2.0kb downstream 2.0kb downstream 2000 false Chr03: 18327724-18329723 Eucalyptus grandis
Eucgr.C01147 5.0kb upstream 5.0kb upstream 6067 true Chr03: 18321657-18327723 Eucalyptus grandis
Eucgr.C01147 5.0kb upstream 5.0kb upstream 5000 false Chr03: 18321657-18326656 Eucalyptus grandis
Eucgr.C01147 5.0kb downstream 5.0kb downstream 6067 true Chr03: 18326657-18332723 Eucalyptus grandis
Eucgr.C01147 5.0kb downstream 5.0kb downstream 5000 false Chr03: 18327724-18332723 Eucalyptus grandis
Eucgr.C01147 10.0kb upstream 10.0kb upstream 11067 true Chr03: 18316657-18327723 Eucalyptus grandis
Eucgr.C01147 10.0kb upstream 10.0kb upstream 10000 false Chr03: 18316657-18326656 Eucalyptus grandis
Eucgr.C01147 10.0kb downstream 10.0kb downstream 11067 true Chr03: 18326657-18337723 Eucalyptus grandis
Eucgr.C01147 10.0kb downstream 10.0kb downstream 10000 false Chr03: 18327724-18337723 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.55981 0.0 22.0512    
cufflinks 3.33105 0.0 9.31914   Low
cufflinks 6.63394 0.0 17.4877    
cufflinks 9.61148 0.0 24.3106    
cufflinks 4.06693 0.0 11.1914    
cufflinks 14.7155 0.0 36.2221   High

0 Strain