Gene : Eucgr.C02122 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1672
Name:  ? Eucgr.C02122 Secondary Identifier:  ? PAC:32039024
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C02122 0.5kb upstream 0.5kb upstream 2246 true Chr03: 39408936-39411181 Eucalyptus grandis
Eucgr.C02122 0.5kb upstream 0.5kb upstream 500 false Chr03: 39408936-39409435 Eucalyptus grandis
Eucgr.C02122 0.5kb downstream 0.5kb downstream 2246 true Chr03: 39409436-39411681 Eucalyptus grandis
Eucgr.C02122 0.5kb downstream 0.5kb downstream 500 false Chr03: 39411182-39411681 Eucalyptus grandis
Eucgr.C02122 1.0kb upstream 1.0kb upstream 2746 true Chr03: 39408436-39411181 Eucalyptus grandis
Eucgr.C02122 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39408436-39409435 Eucalyptus grandis
Eucgr.C02122 1.0kb downstream 1.0kb downstream 2746 true Chr03: 39409436-39412181 Eucalyptus grandis
Eucgr.C02122 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39411182-39412181 Eucalyptus grandis
Eucgr.C02122 2.0kb upstream 2.0kb upstream 3746 true Chr03: 39407436-39411181 Eucalyptus grandis
Eucgr.C02122 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39407436-39409435 Eucalyptus grandis
Eucgr.C02122 2.0kb downstream 2.0kb downstream 3746 true Chr03: 39409436-39413181 Eucalyptus grandis
Eucgr.C02122 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39411182-39413181 Eucalyptus grandis
Eucgr.C02122 5.0kb upstream 5.0kb upstream 6746 true Chr03: 39404436-39411181 Eucalyptus grandis
Eucgr.C02122 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39404436-39409435 Eucalyptus grandis
Eucgr.C02122 5.0kb downstream 5.0kb downstream 6746 true Chr03: 39409436-39416181 Eucalyptus grandis
Eucgr.C02122 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39411182-39416181 Eucalyptus grandis
Eucgr.C02122 10.0kb upstream 10.0kb upstream 11746 true Chr03: 39399436-39411181 Eucalyptus grandis
Eucgr.C02122 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39399436-39409435 Eucalyptus grandis
Eucgr.C02122 10.0kb downstream 10.0kb downstream 11746 true Chr03: 39409436-39421181 Eucalyptus grandis
Eucgr.C02122 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39411182-39421181 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070457 5270 Rosid View MSA
123736471 5271 Pentapetalae View MSA
122786011 5272 Eudicot View MSA
122048876 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.691051 0.0 2.09291    
cufflinks 0.750598 0.0 2.22121 Low  
cufflinks 1.02467 0.0 2.95035    
cufflinks 0.930239 0.0 2.68976    
cufflinks 0.278606 0.0 0.943183 Low Low
cufflinks 0.470204 0.0 1.51221 Low  

0 Strain