Gene : Eucgr.C04257 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3273
Name:  ? Eucgr.C04257 Secondary Identifier:  ? PAC:32036799
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C04257 0.5kb upstream 0.5kb upstream 1976 true Chr03: 80077550-80079525 Eucalyptus grandis
Eucgr.C04257 0.5kb upstream 0.5kb upstream 500 false Chr03: 80077550-80078049 Eucalyptus grandis
Eucgr.C04257 0.5kb downstream 0.5kb downstream 1976 true Chr03: 80078050-80080025 Eucalyptus grandis
Eucgr.C04257 0.5kb downstream 0.5kb downstream 500 false Chr03: 80079526-80080025 Eucalyptus grandis
Eucgr.C04257 1.0kb upstream 1.0kb upstream 2476 true Chr03: 80077050-80079525 Eucalyptus grandis
Eucgr.C04257 1.0kb upstream 1.0kb upstream 1000 false Chr03: 80077050-80078049 Eucalyptus grandis
Eucgr.C04257 1.0kb downstream 1.0kb downstream 2476 true Chr03: 80078050-80080525 Eucalyptus grandis
Eucgr.C04257 1.0kb downstream 1.0kb downstream 1000 false Chr03: 80079526-80080525 Eucalyptus grandis
Eucgr.C04257 2.0kb upstream 2.0kb upstream 3476 true Chr03: 80076050-80079525 Eucalyptus grandis
Eucgr.C04257 2.0kb upstream 2.0kb upstream 2000 false Chr03: 80076050-80078049 Eucalyptus grandis
Eucgr.C04257 2.0kb downstream 2.0kb downstream 3476 true Chr03: 80078050-80081525 Eucalyptus grandis
Eucgr.C04257 2.0kb downstream 2.0kb downstream 2000 false Chr03: 80079526-80081525 Eucalyptus grandis
Eucgr.C04257 5.0kb upstream 5.0kb upstream 6476 true Chr03: 80073050-80079525 Eucalyptus grandis
Eucgr.C04257 5.0kb upstream 5.0kb upstream 5000 false Chr03: 80073050-80078049 Eucalyptus grandis
Eucgr.C04257 5.0kb downstream 5.0kb downstream 6476 true Chr03: 80078050-80084525 Eucalyptus grandis
Eucgr.C04257 5.0kb downstream 5.0kb downstream 5000 false Chr03: 80079526-80084525 Eucalyptus grandis
Eucgr.C04257 10.0kb upstream 10.0kb upstream 11476 true Chr03: 80068050-80079525 Eucalyptus grandis
Eucgr.C04257 10.0kb upstream 10.0kb upstream 10000 false Chr03: 80068050-80078049 Eucalyptus grandis
Eucgr.C04257 10.0kb downstream 10.0kb downstream 11476 true Chr03: 80078050-80089525 Eucalyptus grandis
Eucgr.C04257 10.0kb downstream 10.0kb downstream 10000 false Chr03: 80079526-80089525 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050196 5270 Rosid View MSA
123737959 5271 Pentapetalae View MSA
122788156 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.196288 0.0 0.733972 Low  
cufflinks 1.74968 0.0 4.95535   High
cufflinks 0.392687 0.0 1.34128    
cufflinks 0.185042 0.0 0.69719 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.22455 0.0 3.62049    

0 Strain