Gene : Eucgr.D00714 E. grandis v2.0
Defline:  (1 of 527) PF13041 - PPR repeat family (PPR_2) Genomic Order:  586
Name:  ? Eucgr.D00714 Secondary Identifier:  ? PAC:32049731
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00714 0.5kb upstream 0.5kb upstream 3772 true Chr04: 13085447-13089218 Eucalyptus grandis
Eucgr.D00714 0.5kb upstream 0.5kb upstream 500 false Chr04: 13088719-13089218 Eucalyptus grandis
Eucgr.D00714 0.5kb downstream 0.5kb downstream 3772 true Chr04: 13084947-13088718 Eucalyptus grandis
Eucgr.D00714 0.5kb downstream 0.5kb downstream 500 false Chr04: 13084947-13085446 Eucalyptus grandis
Eucgr.D00714 1.0kb upstream 1.0kb upstream 4272 true Chr04: 13085447-13089718 Eucalyptus grandis
Eucgr.D00714 1.0kb upstream 1.0kb upstream 1000 false Chr04: 13088719-13089718 Eucalyptus grandis
Eucgr.D00714 1.0kb downstream 1.0kb downstream 4272 true Chr04: 13084447-13088718 Eucalyptus grandis
Eucgr.D00714 1.0kb downstream 1.0kb downstream 1000 false Chr04: 13084447-13085446 Eucalyptus grandis
Eucgr.D00714 2.0kb upstream 2.0kb upstream 5272 true Chr04: 13085447-13090718 Eucalyptus grandis
Eucgr.D00714 2.0kb upstream 2.0kb upstream 2000 false Chr04: 13088719-13090718 Eucalyptus grandis
Eucgr.D00714 2.0kb downstream 2.0kb downstream 5272 true Chr04: 13083447-13088718 Eucalyptus grandis
Eucgr.D00714 2.0kb downstream 2.0kb downstream 2000 false Chr04: 13083447-13085446 Eucalyptus grandis
Eucgr.D00714 5.0kb upstream 5.0kb upstream 8272 true Chr04: 13085447-13093718 Eucalyptus grandis
Eucgr.D00714 5.0kb upstream 5.0kb upstream 5000 false Chr04: 13088719-13093718 Eucalyptus grandis
Eucgr.D00714 5.0kb downstream 5.0kb downstream 8272 true Chr04: 13080447-13088718 Eucalyptus grandis
Eucgr.D00714 5.0kb downstream 5.0kb downstream 5000 false Chr04: 13080447-13085446 Eucalyptus grandis
Eucgr.D00714 10.0kb upstream 10.0kb upstream 13272 true Chr04: 13085447-13098718 Eucalyptus grandis
Eucgr.D00714 10.0kb upstream 10.0kb upstream 10000 false Chr04: 13088719-13098718 Eucalyptus grandis
Eucgr.D00714 10.0kb downstream 10.0kb downstream 13272 true Chr04: 13075447-13088718 Eucalyptus grandis
Eucgr.D00714 10.0kb downstream 10.0kb downstream 10000 false Chr04: 13075447-13085446 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026168 5273 Angiosperm View MSA
124060726 5270 Rosid View MSA
123739079 5271 Pentapetalae View MSA
122791557 5272 Eudicot View MSA
121296211 5274 Embryophyte View MSA
123334413 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.85027 0.0 4.6881   Low
cufflinks 7.71887 0.0 17.264    
cufflinks 2.89776 0.0 6.97504    
cufflinks 7.06901 0.0 15.848    
cufflinks 17.4109 0.0 38.5372   High
cufflinks 3.13323 0.0 7.58045    

0 Strain