Gene : Eucgr.D00596 E. grandis v2.0
Defline:  (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) Genomic Order:  481
Name:  ? Eucgr.D00596 Secondary Identifier:  ? PAC:32051351
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00596 0.5kb upstream 0.5kb upstream 14313 true Chr04: 11281707-11296019 Eucalyptus grandis
Eucgr.D00596 0.5kb upstream 0.5kb upstream 500 false Chr04: 11281707-11282206 Eucalyptus grandis
Eucgr.D00596 0.5kb downstream 0.5kb downstream 14313 true Chr04: 11282207-11296519 Eucalyptus grandis
Eucgr.D00596 0.5kb downstream 0.5kb downstream 500 false Chr04: 11296020-11296519 Eucalyptus grandis
Eucgr.D00596 1.0kb upstream 1.0kb upstream 14813 true Chr04: 11281207-11296019 Eucalyptus grandis
Eucgr.D00596 1.0kb upstream 1.0kb upstream 1000 false Chr04: 11281207-11282206 Eucalyptus grandis
Eucgr.D00596 1.0kb downstream 1.0kb downstream 14813 true Chr04: 11282207-11297019 Eucalyptus grandis
Eucgr.D00596 1.0kb downstream 1.0kb downstream 1000 false Chr04: 11296020-11297019 Eucalyptus grandis
Eucgr.D00596 2.0kb upstream 2.0kb upstream 15813 true Chr04: 11280207-11296019 Eucalyptus grandis
Eucgr.D00596 2.0kb upstream 2.0kb upstream 2000 false Chr04: 11280207-11282206 Eucalyptus grandis
Eucgr.D00596 2.0kb downstream 2.0kb downstream 15813 true Chr04: 11282207-11298019 Eucalyptus grandis
Eucgr.D00596 2.0kb downstream 2.0kb downstream 2000 false Chr04: 11296020-11298019 Eucalyptus grandis
Eucgr.D00596 5.0kb upstream 5.0kb upstream 18813 true Chr04: 11277207-11296019 Eucalyptus grandis
Eucgr.D00596 5.0kb upstream 5.0kb upstream 5000 false Chr04: 11277207-11282206 Eucalyptus grandis
Eucgr.D00596 5.0kb downstream 5.0kb downstream 18813 true Chr04: 11282207-11301019 Eucalyptus grandis
Eucgr.D00596 5.0kb downstream 5.0kb downstream 5000 false Chr04: 11296020-11301019 Eucalyptus grandis
Eucgr.D00596 10.0kb upstream 10.0kb upstream 23813 true Chr04: 11272207-11296019 Eucalyptus grandis
Eucgr.D00596 10.0kb upstream 10.0kb upstream 10000 false Chr04: 11272207-11282206 Eucalyptus grandis
Eucgr.D00596 10.0kb downstream 10.0kb downstream 23813 true Chr04: 11282207-11306019 Eucalyptus grandis
Eucgr.D00596 10.0kb downstream 10.0kb downstream 10000 false Chr04: 11296020-11306019 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069157 5270 Rosid View MSA
123743717 5271 Pentapetalae View MSA
122786620 5272 Eudicot View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.5286 0.0 31.9029    
cufflinks 9.03468 0.0 20.6987   Low
cufflinks 14.0081 0.0 33.3011    
cufflinks 10.7535 0.0 27.3622    
cufflinks 9.64735 0.0 27.416    
cufflinks 21.6744 0.0 49.8704   High

0 Strain