Gene : Eucgr.D00535 E. grandis v2.0
Defline:  (1 of 3) PTHR18968//PTHR18968:SF132 - THIAMINE PYROPHOSPHATE ENZYMES Genomic Order:  435
Name:  ? Eucgr.D00535 Secondary Identifier:  ? PAC:32049520
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5486 Eucalyptus grandis pathologic  
Egrandis PWY-6330 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00535 0.5kb upstream 0.5kb upstream 5065 true Chr04: 9933922-9938986 Eucalyptus grandis
Eucgr.D00535 0.5kb upstream 0.5kb upstream 500 false Chr04: 9938487-9938986 Eucalyptus grandis
Eucgr.D00535 0.5kb downstream 0.5kb downstream 5065 true Chr04: 9933422-9938486 Eucalyptus grandis
Eucgr.D00535 0.5kb downstream 0.5kb downstream 500 false Chr04: 9933422-9933921 Eucalyptus grandis
Eucgr.D00535 1.0kb upstream 1.0kb upstream 5565 true Chr04: 9933922-9939486 Eucalyptus grandis
Eucgr.D00535 1.0kb upstream 1.0kb upstream 1000 false Chr04: 9938487-9939486 Eucalyptus grandis
Eucgr.D00535 1.0kb downstream 1.0kb downstream 5565 true Chr04: 9932922-9938486 Eucalyptus grandis
Eucgr.D00535 1.0kb downstream 1.0kb downstream 1000 false Chr04: 9932922-9933921 Eucalyptus grandis
Eucgr.D00535 2.0kb upstream 2.0kb upstream 6565 true Chr04: 9933922-9940486 Eucalyptus grandis
Eucgr.D00535 2.0kb upstream 2.0kb upstream 2000 false Chr04: 9938487-9940486 Eucalyptus grandis
Eucgr.D00535 2.0kb downstream 2.0kb downstream 6565 true Chr04: 9931922-9938486 Eucalyptus grandis
Eucgr.D00535 2.0kb downstream 2.0kb downstream 2000 false Chr04: 9931922-9933921 Eucalyptus grandis
Eucgr.D00535 5.0kb upstream 5.0kb upstream 9565 true Chr04: 9933922-9943486 Eucalyptus grandis
Eucgr.D00535 5.0kb upstream 5.0kb upstream 5000 false Chr04: 9938487-9943486 Eucalyptus grandis
Eucgr.D00535 5.0kb downstream 5.0kb downstream 9565 true Chr04: 9928922-9938486 Eucalyptus grandis
Eucgr.D00535 5.0kb downstream 5.0kb downstream 5000 false Chr04: 9928922-9933921 Eucalyptus grandis
Eucgr.D00535 10.0kb upstream 10.0kb upstream 14565 true Chr04: 9933922-9948486 Eucalyptus grandis
Eucgr.D00535 10.0kb upstream 10.0kb upstream 10000 false Chr04: 9938487-9948486 Eucalyptus grandis
Eucgr.D00535 10.0kb downstream 10.0kb downstream 14565 true Chr04: 9923922-9938486 Eucalyptus grandis
Eucgr.D00535 10.0kb downstream 10.0kb downstream 10000 false Chr04: 9923922-9933921 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791820 5273 Angiosperm View MSA
124070519 5270 Rosid View MSA
123742600 5271 Pentapetalae View MSA
122794163 5272 Eudicot View MSA
121351042 5274 Embryophyte View MSA
123426958 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 66.2339 0.0 152.654 High High
cufflinks 29.1071 0.0 64.5891    
cufflinks 45.7333 0.0 103.027 High  
cufflinks 12.8857 0.0 28.6839   Low
cufflinks 15.5593 0.0 34.4934   Low
cufflinks 46.2439 0.0 104.267 High  

0 Strain