Gene : Eucgr.D00343 E. grandis v2.0
Defline:  (1 of 1) PTHR11952:SF10 - RIMM-LIKE 16S RRNA PROCESSING PROTEIN Genomic Order:  274
Name:  ? Eucgr.D00343 Secondary Identifier:  ? PAC:32049492
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00343 0.5kb upstream 0.5kb upstream 8895 true Chr04: 5926028-5934922 Eucalyptus grandis
Eucgr.D00343 0.5kb upstream 0.5kb upstream 500 false Chr04: 5926028-5926527 Eucalyptus grandis
Eucgr.D00343 0.5kb downstream 0.5kb downstream 8895 true Chr04: 5926528-5935422 Eucalyptus grandis
Eucgr.D00343 0.5kb downstream 0.5kb downstream 500 false Chr04: 5934923-5935422 Eucalyptus grandis
Eucgr.D00343 1.0kb upstream 1.0kb upstream 9395 true Chr04: 5925528-5934922 Eucalyptus grandis
Eucgr.D00343 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5925528-5926527 Eucalyptus grandis
Eucgr.D00343 1.0kb downstream 1.0kb downstream 9395 true Chr04: 5926528-5935922 Eucalyptus grandis
Eucgr.D00343 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5934923-5935922 Eucalyptus grandis
Eucgr.D00343 2.0kb upstream 2.0kb upstream 10395 true Chr04: 5924528-5934922 Eucalyptus grandis
Eucgr.D00343 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5924528-5926527 Eucalyptus grandis
Eucgr.D00343 2.0kb downstream 2.0kb downstream 10395 true Chr04: 5926528-5936922 Eucalyptus grandis
Eucgr.D00343 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5934923-5936922 Eucalyptus grandis
Eucgr.D00343 5.0kb upstream 5.0kb upstream 13395 true Chr04: 5921528-5934922 Eucalyptus grandis
Eucgr.D00343 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5921528-5926527 Eucalyptus grandis
Eucgr.D00343 5.0kb downstream 5.0kb downstream 13395 true Chr04: 5926528-5939922 Eucalyptus grandis
Eucgr.D00343 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5934923-5939922 Eucalyptus grandis
Eucgr.D00343 10.0kb upstream 10.0kb upstream 18395 true Chr04: 5916528-5934922 Eucalyptus grandis
Eucgr.D00343 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5916528-5926527 Eucalyptus grandis
Eucgr.D00343 10.0kb downstream 10.0kb downstream 18395 true Chr04: 5926528-5944922 Eucalyptus grandis
Eucgr.D00343 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5934923-5944922 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064396 5270 Rosid View MSA
123739225 5271 Pentapetalae View MSA
122792517 5272 Eudicot View MSA
122043949 5273 Angiosperm View MSA
121344082 5274 Embryophyte View MSA
123379972 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.74142 0.0 19.795    
cufflinks 1.80305 0.0 4.69413    
cufflinks 8.69749 0.0 19.6619    
cufflinks 0.700486 0.0 2.00008   Low
cufflinks 1.97498 0.0 5.10442    
cufflinks 39.9639 0.0 89.4724 High High

0 Strain