Gene : Eucgr.D00354 E. grandis v2.0
Defline:  (1 of 1) PTHR10791//PTHR10791:SF23 - RAG1-ACTIVATING PROTEIN 1 Genomic Order:  285
Name:  ? Eucgr.D00354 Secondary Identifier:  ? PAC:32050945
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D00354 0.5kb upstream 0.5kb upstream 2717 true Chr04: 6134847-6137563 Eucalyptus grandis
Eucgr.D00354 0.5kb upstream 0.5kb upstream 500 false Chr04: 6137064-6137563 Eucalyptus grandis
Eucgr.D00354 0.5kb downstream 0.5kb downstream 2717 true Chr04: 6134347-6137063 Eucalyptus grandis
Eucgr.D00354 0.5kb downstream 0.5kb downstream 500 false Chr04: 6134347-6134846 Eucalyptus grandis
Eucgr.D00354 1.0kb upstream 1.0kb upstream 3217 true Chr04: 6134847-6138063 Eucalyptus grandis
Eucgr.D00354 1.0kb upstream 1.0kb upstream 1000 false Chr04: 6137064-6138063 Eucalyptus grandis
Eucgr.D00354 1.0kb downstream 1.0kb downstream 3217 true Chr04: 6133847-6137063 Eucalyptus grandis
Eucgr.D00354 1.0kb downstream 1.0kb downstream 1000 false Chr04: 6133847-6134846 Eucalyptus grandis
Eucgr.D00354 2.0kb upstream 2.0kb upstream 4217 true Chr04: 6134847-6139063 Eucalyptus grandis
Eucgr.D00354 2.0kb upstream 2.0kb upstream 2000 false Chr04: 6137064-6139063 Eucalyptus grandis
Eucgr.D00354 2.0kb downstream 2.0kb downstream 4217 true Chr04: 6132847-6137063 Eucalyptus grandis
Eucgr.D00354 2.0kb downstream 2.0kb downstream 2000 false Chr04: 6132847-6134846 Eucalyptus grandis
Eucgr.D00354 5.0kb upstream 5.0kb upstream 7217 true Chr04: 6134847-6142063 Eucalyptus grandis
Eucgr.D00354 5.0kb upstream 5.0kb upstream 5000 false Chr04: 6137064-6142063 Eucalyptus grandis
Eucgr.D00354 5.0kb downstream 5.0kb downstream 7217 true Chr04: 6129847-6137063 Eucalyptus grandis
Eucgr.D00354 5.0kb downstream 5.0kb downstream 5000 false Chr04: 6129847-6134846 Eucalyptus grandis
Eucgr.D00354 10.0kb upstream 10.0kb upstream 12217 true Chr04: 6134847-6147063 Eucalyptus grandis
Eucgr.D00354 10.0kb upstream 10.0kb upstream 10000 false Chr04: 6137064-6147063 Eucalyptus grandis
Eucgr.D00354 10.0kb downstream 10.0kb downstream 12217 true Chr04: 6124847-6137063 Eucalyptus grandis
Eucgr.D00354 10.0kb downstream 10.0kb downstream 10000 false Chr04: 6124847-6134846 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072962 5270 Rosid View MSA
123749486 5271 Pentapetalae View MSA
122796562 5272 Eudicot View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.8479 0.0 34.9227    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.06692 0.0 15.5842    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.504419 0.0 1.70764 Low Low
cufflinks 6.35152 0.0 16.3062    

0 Strain